Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2141 122 5e-23 seq865 114 8e-21 seq498 114 8e-21 seq202 114 8e-21 >seq2141 Length=12878 Score = 122 bits (134), Expect = 5e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | || | ||| ||||| ||| ||||||||||||||||||||| Sbjct 5130 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 5071 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||||||||||||||| || || || || | ||| || ||||| || || Sbjct 5070 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 5011 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | ||| || |||||| ||| ||||| |||||| | | ||| ||||| || | Sbjct 5010 ATTCCTTCTTTGTCT-TGAATTTTTGCTTTAACTTGGT-CAATAGTGTCGGAAGATTCAA 4953 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | ||| || || || ||||| | ||||| || || || |||||| Sbjct 4952 CTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATG 4903 Score = 116 bits (128), Expect = 2e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | ||||||||| || || ||| |||||||| || || || ||| Sbjct 5586 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 5527 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || ||||||||||||||||| || || | ||| || || || || || Sbjct 5526 AGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGA 5467 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTA-ACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | || || |||||| |||||| ||||| ||| || || || ||| || Sbjct 5466 ATACCTTCTTTGTCTTGAATCTTTGCTTTTACTTGAT-CGATGGTATCGGAAGACTCAAC 5408 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||| || |||| ||||| |||||||| ||||| Sbjct 5407 TTCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 5360 Score = 105 bits (116), Expect = 4e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | |||||| | || | ||| |||||| || |||||||| || || || ||| Sbjct 5358 CCGCCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAA 5299 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || |||||||||||||| || || || | ||| || ||||| || || Sbjct 5298 AGGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGG 5239 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | |||||||| ||| ||| ||| ||||| || | | || || || | ||| | Sbjct 5238 ATACCCTCCTTATCT-TGAATTTTGGTTTTTACTTGGT-CGATGGTATCCGAGGACTCTA 5181 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||| ||| || ||||| ||||| | || || || || || ||||| Sbjct 5180 CGTCCAAGGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 5132 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || ||||| ||||||||||| ||||| || || | ||||| | ||| ||||| || || Sbjct 5778 TCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAA 5719 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--G 34633 || ||||| || || || || || | ||||| || ||| ||| ||| |||||||| | Sbjct 5718 ATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCT-TGAATTTTGGTTTTAACCTG 5660 Query 34634 ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 || ||| || || || || || | ||| ||||| ||||| || | ||||| | Sbjct 5659 AT-CAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTA 5601 Query 34694 CAAAAATCTGCAT 34706 ||||||| ||||| Sbjct 5600 CAAAAATTTGCAT 5588 >seq865 Length=39574 Score = 114 bits (126), Expect = 8e-21 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | ||| | ||||||||| ||||||||| || || |||||||| Sbjct 10189 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGAC 10130 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||||||||||||||| || || || || || ||||| || Sbjct 10129 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 10070 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | || || |||||| ||| || | |||||| | | ||| || ||| | ||| | Sbjct 10069 ATGCCTTCTTTGTCT-TGAATCTTCGCTTTAACTTGGT-CAATGGTATCTGAGGACTCTA 10012 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||||||||| | || || || ||||| ||||| Sbjct 10011 CTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 9963 >seq498 Length=39471 Score = 114 bits (126), Expect = 8e-21 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || |||||||| || ||||| ||||||| || | ||||| | |||||||| |||||| Sbjct 34854 TCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAAT 34795 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 |||||||| ||||| ||||| || | ||| || || ||| ||| |||| ||| || | Sbjct 34794 ATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCT-TGAATTTTTTCTTTGACTTT 34736 Query 34636 A-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | || || || || || ||||| | || || |||||||| || | ||||| || Sbjct 34735 ATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAAC 34676 Query 34695 AAAAATCTGCATGTT 34709 |||||| |||||||| Sbjct 34675 AAAAATTTGCATGTT 34661 >seq202 Length=70977 Score = 114 bits (126), Expect = 8e-21 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || | ||||||||| || |||||||| ||||||||||| Sbjct 30608 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 30549 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || ||| | ||||| | ||||||||| || || ||||| || ||||| || || || Sbjct 30548 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 30489 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | ||| ||||| ||| ||| |||| |||||| ||| ||| || || | | ||| | Sbjct 30488 ATTCCTTCCTTATCT-TGAATCTTTGCTTTAACTTGAT-CAATAGTATCATTGGACTCGA 30431 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || ||||| || || | || || || || || ||||| Sbjct 30430 CTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 30382 Score = 111 bits (122), Expect = 1e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || | |||||||||| || |||||||||||||| ||||| Sbjct 30836 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 30777 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| | ||||||||| || || || || || ||||| || || || Sbjct 30776 AATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGG 30717 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | || || || ||| ||| |||| |||||| | | || || || | ||| | Sbjct 30716 ATACCTTCTTTATCT-TGAATCTTTGCTTTAACTTGGT-CTATGGTATCAGAGGACTCTA 30659 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||||||||| | |||||| || ||||| ||||| Sbjct 30658 CTTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 30610 Score = 102 bits (112), Expect = 5e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || | ||||||||| ||||||||||| ||||| || || Sbjct 31292 CCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGAT 31233 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | |||||||||||| || || || || ||||| || || || Sbjct 31232 AAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGG 31173 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | || ||||| ||| ||| |||| |||||| ||| || || || | ||| | Sbjct 31172 ATACCTTCCTTATCT-TGAATCTTTGCTTTAACTTGAT-CTATGGTATCAGAGGACTCGA 31115 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||||||||| | || || || ||||| ||||| Sbjct 31114 CTTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 31066 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| | || | ||||||||| || |||||||| ||||||||||| Sbjct 31064 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 31005 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||||||||| || || || || || ||||| || || || Sbjct 31004 AACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGG 30945 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | || || || ||| ||| || ||||| || ||| || || || | ||| | Sbjct 30944 ATACCTTCTTTATCT-TGAATCTTCGTTTTTACTTGAT-CTATGGTATCAGAGGACTCGA 30887 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || || ||||||||||| | || || || ||||| ||||| Sbjct 30886 CTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 30838 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| | || | ||||||||| || |||||||| |||||||| || Sbjct 31520 CCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGAT 31461 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||||||||| || || || || || || || || || || Sbjct 31460 AAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGA 31401 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC--GATAAAATTGTGTCTTCGCTCTCCA 34657 | || ||||| ||| |||||| | |||||| | | | | || || | ||| | Sbjct 31400 ATACCTTCCTTATCTTGAATCTTT-GCTTTAACTTGGTCTA-TGGTATCAGAGGACTCAA 31343 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||| || ||||||||||| | || || || ||||| ||||| Sbjct 31342 CTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 31294 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||||||||| | || | ||| ||||| ||| || |||||||| ||||| || Sbjct 30380 CCACCTCTAAGACGGAGTACGAGATGAAGAGTTGACTCTTTCTGAATGTTGTAATCAGAT 30321 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | | || ||||||| | ||||| |||||||| ||||| || ||||| ||||| || Sbjct 30320 AAGCTACGTCCGTCTTCCAACTGTTTTCCGGCAAAGATTAAGCGTTGTTGATCCGGAGGA 30261 Query 34600 ACTCC 34604 | ||| Sbjct 30260 ATTCC 30256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314688423041255