Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq498 158 1e-33 seq2141 150 2e-31 seq865 140 3e-28 seq202 118 9e-22 >seq498 Length=39471 Score = 158 bits (174), Expect = 1e-33 Identities = 191/256 (75%), Gaps = 13/256 (5%) Strand=Plus/Plus Query 26963 CAATAAATTTTTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTC 27022 ||||||||||||| || || ||||| || ||||| ||||| || || || || | Sbjct 34646 CAATAAATTTTTT----TAAAC---ATGCAAATTTTTGTTAAAACACTTACTGGTAAAAC 34698 Query 27023 TATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGA 27082 |||||| | ||||| ||| ||| | || || | |||||| ||||||||||||| Sbjct 34699 CATTACTTTAGAAGTTGAAAGTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGA 34758 Query 27083 CAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGA 27142 |||||||| || || || |||||||| |||||||||| || || ||||| || ||||| Sbjct 34759 TAAAGAAGGAATCCCCCCGGATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGA 34818 Query 27143 ---CAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 |||| || ||||||||||||| |||||||| || || || ||||| ||||| | Sbjct 34819 TGGACGTTC-AC--TTTCCGATTACAATATTCAAAAAGAATCAACATTACACTTGGTACT 34875 Query 27200 GCGTTTGCGGGGTGGC 27215 ||||| || |||||| Sbjct 34876 TCGTTTACGCGGTGGC 34891 >seq2141 Length=12878 Score = 150 bits (166), Expect = 2e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||| || ||||| ||| | || || |||||||| ||| | || Sbjct 4903 CATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTC 4962 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| || ||| ||||||||||||||||||||| || || || || || Sbjct 4963 CGACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCA 5022 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | ||| ||||||||| | |||||| || ||| |||| ||||| || Sbjct 5023 GCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAA 5082 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||||||||| ||||| || Sbjct 5083 CATTCAAAAAGAGTCAAC 5100 Score = 132 bits (146), Expect = 4e-26 Identities = 179/247 (72%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || || || | |||||| | ||||| || | ||| Sbjct 5360 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 5419 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || ||| ||| ||||||||||||||||| || || || ||||| Sbjct 5420 GATACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 5479 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | |||||| |||||| | || || | ||| |||| || ||||| Sbjct 5480 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 5539 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 |||||||| ||||| || | |||||||| | ||| | || ||||| || ||| | | Sbjct 5540 ATTCAAAAAGAGTCAACACTTCATTTGGTGCTTCGTCTTCGTGGTGGTAT-GCAA--ATT 5596 Query 27228 TTTGTAA 27234 ||||||| Sbjct 5597 TTTGTAA 5603 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| || || || ||| | ||||| ||||| || ||| | || Sbjct 5588 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 5647 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| ||| ||| ||||||||||| ||||| || || || || ||||| Sbjct 5648 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAG 5707 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | ||| || || ||||||||||| || || |||| ||||| ||| Sbjct 5708 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 5767 Query 27168 ATTCAAAAGGAGTCGAC 27184 || ||||| || || || Sbjct 5768 ATCCAAAAAGAATCAAC 5784 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || ||||| || || |||||||| | || || | || || || | || Sbjct 5132 ATGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 5191 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || ||| ||||||||||| || || || || || || || || Sbjct 5192 GATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 5251 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||| || |||||| | || || | ||| ||||||| ||||| Sbjct 5252 CAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAAT 5311 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | ||| | ||| | ||| | || || || || Sbjct 5312 ATTCAAAAAGAATCCACTCTTCATCTCGTTCTCCGTCTTCGTGGCGGTAT 5361 >seq865 Length=39574 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| ||||| || |||||||||||||||| || | || Sbjct 9963 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 10022 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| || ||| || |||||||||||||||||||| || || ||||| Sbjct 10023 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 10082 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||||| |||||||||||||| | ||| | || |||||||| Sbjct 10083 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 10142 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || | ||| | || | ||||| | ||||| || Sbjct 10143 ATCCAAAAGGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGGTAT 10192 Score = 111 bits (122), Expect = 1e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || || ||||| || |||||||||||||||| ||| | || Sbjct 10191 ATGCAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCT 10250 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| ||||| ||| ||||||||||||||||| || || || |||||| Sbjct 10251 GATACAATTGAACAAGTCAAGACAAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAA 10310 Query 27108 CAGCGTTTAATATACGCCGGCAAACA 27133 || | || || | || |||||||| Sbjct 10311 CAAAGATTGATTTTTGCTGGCAAACA 10336 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || ||||| ||||| ||||||||| |||| ||||||||||| ||| | || Sbjct 9647 CATGCAAATCTTCGTAAAGACTCTTACCGGCAAGACTATCACTCTTGAAGTTGAATCTTC 9706 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCAT 27094 ||| | ||||| |||||| ||||| |||||||||||||| || Sbjct 9707 TGACACCATTGACCAAGTCAAAGGCAAAATCCAAGACAAAGAAGGTAT 9754 >seq202 Length=70977 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| |||||||| || | || ||||||||||| || | || Sbjct 30610 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 30669 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || ||| ||| |||||||| |||||||| || || || |||||| Sbjct 30670 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAA 30729 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| || |||||||| ||||| || || | || || || ||| Sbjct 30730 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAAC 30789 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | ||| | || | ||||| | ||||| || Sbjct 30790 ATTCAAAAAGAATCCACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTAT 30839 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| ||||| || | |||||||||||||| || | || Sbjct 31066 ATGCAAATTTTCGTCAAGACTCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 31125 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || ||| ||| |||||||| || ||||| || || || |||||| Sbjct 31126 GATACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAA 31185 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | |||||| |||||||||||||| | || | || || || || Sbjct 31186 CAACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAAT 31245 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || || | ||| | || | ||||| | ||||| || Sbjct 31246 ATTCAAAAGGAATCAACTCTCCATCTCGTACTTCGTTTAAGAGGTGGTAT 31295 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| || | |||||||||||||| || | || Sbjct 30838 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 30897 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || ||| || |||||||| |||||||| || || || |||||| Sbjct 30898 GATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAA 30957 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || || || || | ||| || |||||||| ||||| | ||| |||| || ||||| || Sbjct 30958 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGA-TGGTCGTACGTTGTCAGATTATAA 31016 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| || || || | ||| | || | ||||| | ||||| || Sbjct 31017 TATTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTAT 31067 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || ||||| || | ||||| |||||||| || | || Sbjct 31294 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 31353 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || || ||| ||| |||||||| || ||||| || || || ||||| Sbjct 31354 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 31413 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| || |||||||||||||| || || | || ||||| || Sbjct 31414 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAAT 31473 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| || || || | ||| | || | ||| | |||||||| Sbjct 31474 ATTCAAAAAGAATCTACTCTCCATCTCGTACTTCGTCTTCGGGGTGG 31520 Score = 105 bits (116), Expect = 6e-18 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| ||||| || || || || || || || | ||||| |||||||| || |||| Sbjct 30382 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGA---GTCC 30438 Query 27048 ---GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || | ||||| || ||| ||| |||||||| || ||||| || || || ||| Sbjct 30439 AATGATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGAT 30498 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 ||||| || ||||| | ||| || |||||||||||||| | || | || ||||| Sbjct 30499 CAACAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTAT 30558 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || || | ||| | || | ||||| | ||||| || Sbjct 30559 AATATTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTAT 30611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434860039387200