Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2141 140 8e-28 seq202 131 4e-25 seq865 105 2e-17 seq498 102 2e-16 seq1345 84.2 5e-11 >seq2141 Length=12878 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || || || ||||||||||||||||| | |||||| |||| | || Sbjct 5353 ACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGT 5294 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || || || || |||||||| || || ||||| ||||| || || ||||| Sbjct 5293 TCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACC 5234 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| ||||| || || || || |||||||| || |||| || ||||| || Sbjct 5233 CTCCTTATCTTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAA 5174 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || ||||| || | || |||| ||| | |||||| Sbjct 5173 GGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 5132 Score = 114 bits (126), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| ||||| ||||||||||||| || ||||| | | ||| | |||||| Sbjct 5799 AGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCT 5740 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| |||||||| || | ||||| || || || || ||||| || || ||| Sbjct 5739 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTCTTTATCT 5680 Query 225622 TGGATCTTTTGCTTCACAGCT--TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCG 225679 || | ||||| || | || || ||||| || || | ||| || || | || |||| Sbjct 5679 TGAA--TTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCG 5622 Query 225680 TCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||| || || | ||||||| || | |||||| Sbjct 5621 TCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 5588 Score = 107 bits (118), Expect = 5e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | || || || || |||||||| | |||||| || | | || Sbjct 5581 ACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGT 5522 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || ||||| || || || || || ||||| || || ||||| || || || |||||||| Sbjct 5521 TCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACC 5462 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| |||||| || || |||||||| || || | || || || || Sbjct 5461 TTCTTTGTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAA 5402 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || | |||||| | || | |||||| Sbjct 5401 AGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 5360 >seq202 Length=70977 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || |||||||||||||||||||| | || || || | ||| || | |||||| Sbjct 30821 AGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCT 30762 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| || || ||||||||||| | |||||||| || || || |||||||| || ||| Sbjct 30761 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCT 30702 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| || || || ||||| || |||| || || || | ||||| || Sbjct 30701 TGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGTT 30642 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||| ||||| | ||| | |||||| Sbjct 30641 TTACCGGTCAGCGTTTTAACGAAAATTTGCAT 30610 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | || || || |||||||| ||||||||||| | ||| ||||| | ||||| Sbjct 31514 CGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTA 31455 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| | || || ||||||||||| | ||||| || || || ||||||||| Sbjct 31454 CGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCT 31395 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||| ||||| |||||| || || || ||||| || |||| || || || | Sbjct 31394 TCCTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGG 31335 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || | || || | ||| | |||||| Sbjct 31334 GTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 31294 Score = 122 bits (134), Expect = 2e-22 Identities = 108/134 (81%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || |||||||| ||||||||||| | ||| ||||| | |||||| | ||||||| Sbjct 30593 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCT 30534 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || ||||||||||| | |||||||| || || ||||| |||||||| ||| Sbjct 30533 TCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCT 30474 Query 225622 TGGATCTTTTGCTT 225635 || ||| ||||||| Sbjct 30473 TGAATC-TTTGCTT 30461 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || |||||||| ||||||||||| | ||| ||||| | ||| || | |||||| Sbjct 31049 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCT 30990 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 |||| || || ||||||||||| | |||||||| || || || |||||||| || ||| Sbjct 30989 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCT 30930 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || || || ||||| || |||| || || || | || || || Sbjct 30929 TGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTT 30870 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | ||| | |||||| Sbjct 30869 TTACCGGTGAGGGTCTTGACGAAAATTTGCAT 30838 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || || |||||||| ||||| ||||| | ||| || || | ||||| | |||||| Sbjct 31277 AGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCT 31218 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || || |||||||| | |||||||| || || || ||||||||||| ||| Sbjct 31217 TCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCT 31158 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || |||||| || || || ||||| || |||| || || || | || || || Sbjct 31157 TGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTT 31098 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| || | ||| | |||||| Sbjct 31097 TTACCGGTGAGAGTCTTGACGAAAATTTGCAT 31066 >seq865 Length=39574 Score = 105 bits (116), Expect = 2e-17 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| ||||| || |||||||||| ||| || |||| |||||| | |||||| Sbjct 9946 AGAACAAGGTGAAGAGTTGACTCTTTTTGGATATTATAGTCGGACAAAGTACGTCCATCT 9887 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 || ||||| || ||||||||||| | ||||| || || || ||||||||| Sbjct 9886 TCCAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCT 9836 >seq498 Length=39471 Score = 102 bits (112), Expect = 2e-16 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT--TCTCCCATCTTCTAGCTGCTTCC 225574 || ||||||||||| | ||||||||||| ||||| | |||||||||| ||| || | Sbjct 34860 GTTGATTCTTTTTGAATATTGTAATCGG--AAAGTGAACGTCCATCTTCTAACTGTTTAC 34803 Query 225575 CAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCT 225634 |||| || || | |||||||| || || || || ||||| || ||||| || |||| | Sbjct 34802 CAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGAATTTTTTCTT 34743 Query 225635 TCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAG 225694 | || |||||||| || |||| || ||||| || || || || || || | | Sbjct 34742 TGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTG 34683 Query 225695 TTTTTATGAACACTTGCATTTT 225716 |||| | || | |||||| || Sbjct 34682 TTTTAACAAAAATTTGCATGTT 34661 >seq1345 Length=28361 Score = 84.2 bits (92), Expect = 5e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| ||| | | || || || || ||| ||||| |||| ||| ||||| ||| || Sbjct 3659 ACGTAGTTGCCGTACGAGATGAAGTGTGCTCTCTTTCTGGATATTATAATCACTCAAGGT 3600 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||||||||| || || ||||| || ||||| ||||||| || || | ||| || Sbjct 3599 ACGCCCATCTTCTAATTGTTTTCCAGCAAAAATAAGACGTTGTTTATCAGGAGCAATTCC 3540 Query 225612 TTCCTTGTCTTGGATC 225627 |||||| ||||| ||| Sbjct 3539 TTCCTTATCTTGAATC 3524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192367176650090