Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1702 403 2e-107 seq717 217 2e-51 seq114 105 9e-18 >seq1702 Length=19207 Score = 403 bits (446), Expect = 2e-107 Identities = 685/986 (69%), Gaps = 10/986 (1%) Strand=Plus/Plus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG-CACATCAATG 77982 |||||||||||| ||||||||||| || ||||| |||| || || || || Sbjct 13518 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 13577 Query 77983 ACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 78042 ||| | | ||| | | ||| | ||||||||| ||||| | | ||| || ||| || Sbjct 13578 -CCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAAA 13636 Query 78043 ATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCA 78102 ||| ||| || | | | |||||| ||||| ||||| ||||| | ||| | ||| || | Sbjct 13637 ATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCAA 13696 Query 78103 TAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTC 78162 ||| |||| |||||| | ||||| ||| || || | | || || ||||| || |||| Sbjct 13697 AAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCTC 13756 Query 78163 CCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAG 78222 | || || | |||||| ||||| ||||||||||| | ||||| |||||||| || || | Sbjct 13757 CTTGGTCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATTCCATTTG 13816 Query 78223 ATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCC 78282 | ||||||||||||| ||||||| ||| | || ||||| ||| |||| | | Sbjct 13817 AATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACAC 13876 Query 78283 CTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCT 78342 | || || ||||| ||||||| || | ||||| |||||| ||||| ||||| |||| Sbjct 13877 CAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCCT 13936 Query 78343 CTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 78401 |||| ||||| |||| ||||| ||||||||| || || | |||| | | || Sbjct 13937 CTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGTG 13995 Query 78402 CCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTAT 78461 || |||||||| || ||||||||||| || ||||| | ||||| || | |||||||| Sbjct 13996 CCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTAA 14055 Query 78462 GTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATA 78521 ||||||||||| | ||| || || | ||||| || |||||||| ||||| | |||| Sbjct 14056 GTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCATA 14115 Query 78522 TGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTT 78581 || || || | || | || | |||| || | || ||| |||| | |||| Sbjct 14116 TGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGTT 14175 Query 78582 TTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAATAACAGAATTTAGTTTA 78641 ||||| |||||||| || ||| | | | ||| || ||||| || |||||| ||||| Sbjct 14176 TTAAATCCAAAATAATTATATTTATAATATCTATCATAAATGATCGTAGAATTAAGTTTT 14235 Query 78642 TCTTTGTATTTGGTAACAATATCCATGACAGTAGTT---GAAATAATAGGAGATCGTACA 78698 || | || | ||||||| | ||| || ||||| || | | ||| Sbjct 14236 TCCGAATTGTTCATCACAATAT---TATAAGTTTTTTCAGAAATCATTGACGCGCGTTTC 14292 Query 78699 CCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGttttttt 78758 || |||| ||||| | ||| ||| | | |||||| | |||| ||| | |||||| Sbjct 14293 CCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTTTA 14352 Query 78759 GTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAGGATGT 78818 ||||| || || |||||||| ||||| || | ||||| || | ||||| || |||||| Sbjct 14353 GTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGATGT 14412 Query 78819 TGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAGTTGTGACC 78878 | || || | || || ||||||| || ||| ||||||| || | ||| | || Sbjct 14413 TTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAACA 14472 Query 78879 CCATTATATAGTCCTTGAATAACTTT 78904 || | ||| | |||| ||| || || Sbjct 14473 CCTTGATAAACTCCTGAAATGACCTT 14498 Score = 176 bits (194), Expect = 6e-39 Identities = 250/350 (71%), Gaps = 4/350 (1%) Strand=Plus/Plus Query 77114 AGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATA 77173 ||| ||||| ||||||||||| |||| | || | || |||||| || || ||||| Sbjct 12490 AGGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATA 12549 Query 77174 TGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGC 77233 ||||| | | ||||||| ||||| ||||| | |||||| ||||| ||||| ||||| Sbjct 12550 AGGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGC 12609 Query 77234 CACCAATAAACTATTTCTGAGACCATGTGTTCTG--ATTTTATCTTTTAGATATTTCCAA 77291 | |||||| ||||| | |||| ||||||| ||||| | ||| | | |||||| Sbjct 12610 GAGCAATAATGAATTTCGTACACCA--TGTTCTGATATTTTTTGTTTCAACAAATTCCAA 12667 Query 77292 TCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCA 77351 ||||| | ||| | ||| |||||| ||| | ||||||||||| ||| || || | | Sbjct 12668 TCCCATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACC 12727 Query 77352 TATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCC 77411 |||||| | ||| | ||||| || || | ||| | ||||||||| ||||| Sbjct 12728 GGTGATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCT 12787 Query 77412 AATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGC 77461 ||||| || | ||| ||||| || || || | |||||| || || | ||| Sbjct 12788 AATGCACCATGATACATTGTCTCAAATATTTGCTTATTCAGTTCCTTTGC 12837 Score = 111 bits (122), Expect = 2e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 77663 AACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGC 77722 |||||||||| ||| |||||| || | ||||| || || || |||| | | | | Sbjct 13186 AACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGA 13245 Query 77723 ATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTT 77782 ||||| | ||||| ||||| | ||||||||||||||| || || ||||||||||| || Sbjct 13246 ATATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATT 13305 Query 77783 GCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGA 77842 || ||| || || || || || || ||| | || || || ||||| ||||| || Sbjct 13306 AGATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGA 13365 Query 77843 TTCGATAATAGATTTCCAGAC 77863 ||| | ||| | | ||||||| Sbjct 13366 TTCAAGAATTGCTGTCCAGAC 13386 >seq717 Length=48811 Score = 217 bits (240), Expect = 2e-51 Identities = 325/455 (71%), Gaps = 16/455 (4%) Strand=Plus/Minus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 ||||||||| ||||||||| || || ||||| || || ||||| ||||| |||| Sbjct 5115 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 5056 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATA-AAtttttttAAATC 47955 || || |||||||||||||| ||||| ||| |||||| |||||| | | | Sbjct 5055 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-C 4997 Query 47956 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCAT-TTCACAA 48014 | | | | | | |||||| || || ||||| |||||| ||||||| | ||| | Sbjct 4996 CAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG- 4938 Query 48015 TTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACA 48074 ||||| || || | |||||||||| || || || | ||| |||||||| || || || Sbjct 4937 TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACC 4878 Query 48075 GCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGA-----TACAACAA-ATGT 48128 || ||| |||| || | | ||| |||| ||| |||| | || || ||| Sbjct 4877 GCTTCCGCTATAATAGCTTCTACAGTTT------TTGTTGGAGGTCGTGCACGAAGATGA 4824 Query 48129 TTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTA 48188 | || | | |||||||||||||||||| | |||||||||| | ||||| |||||| Sbjct 4823 GTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTG 4764 Query 48189 GAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT 48248 ||||| || | || ||||| | ||| | ||| || | |||||| |||| |||||||| | Sbjct 4763 GAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCT 4704 Query 48249 CCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||||||||| ||||| || || ||||| || Sbjct 4703 CCAGAAAAGAATATTCCTTCAACAGCGGCAAACGC 4669 Score = 152 bits (168), Expect = 7e-32 Identities = 215/300 (72%), Gaps = 4/300 (1%) Strand=Plus/Minus Query 48411 TAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAAT 48470 |||| ||| || || || |||||||| || || |||||||| || ||||||||| Sbjct 4459 TAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATGATCTGAAAT 4400 Query 48471 CCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTC 48530 || ||||||||||| ||||||| || || || || ||| ||| ||||| | ||||| Sbjct 4399 CCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTT 4340 Query 48531 TCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTT 48590 ||||| || || ||||| || ||||| || || || || || |||||| ||||| Sbjct 4339 TCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTT 4280 Query 48591 TCGTTGGAAGTCAGTTTA---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCA 48647 || | | |||||| | ||| ||||| ||||| || || | || ||||| ||| Sbjct 4279 TCTTCATCGTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCA 4220 Query 48648 GCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATAT-CACTGTATTGGAT 48706 | ||||||||||| || || || ||||| ||||| | ||| || | ||| |||| ||| Sbjct 4219 ACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGATCTACACAATATTTGAT 4160 >seq114 Length=70618 Score = 105 bits (116), Expect = 9e-18 Identities = 198/290 (68%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 77121 ACTATTTGAAATTCTCCAGACAATAC---TCTACGAGTGTAAATATTACTGGTATATGGT 77177 |||| ||||||||| ||| ||||| ||| || |||||||| || || |||||| Sbjct 59952 ACTACTTGAAATTCCCCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGT 59896 Query 77178 TCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACC 77237 || | ||||||||||||| | ||| ||| ||||| ||||| ||||| ||||| | | Sbjct 59895 TCAAAGCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATC 59836 Query 77238 AATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAA 77297 || ||| ||||| | |||| | ||||| || ||||| | | | ||| ||||| Sbjct 59835 AACAAAGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCAT 59776 Query 77298 AGATCTGAAGGTACAAC------ATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCA 77351 ||||||||||| || |||| | ||||| || || || || |||||| Sbjct 59775 CGATCTGAAGGTTGTACTCCTGTTCCCCACAATTCGTAATGAAGGATACCTTTACTAATC 59716 Query 77352 TATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACA 77401 || || | |||||| ||||| || ||| | |||| | |||||| Sbjct 59715 GGGGAACCCTCATATGTAGGGTAAGGACCATCTTTAGCAGCAATTTCACA 59666 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || |||||||| || || ||| |||||| ||||| |||| || || | || ||| Sbjct 58206 GTACCAGCATTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTA 58147 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||||||||||| || || || | ||||||||| | | |||||||||||| Sbjct 58146 TAAGTTTCAATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAAC 58087 Query 78519 ATATGCTGAGGTCTTTCAAC 78538 || || || ||||||||||| Sbjct 58086 ATGTGTTGTGGTCTTTCAAC 58067 Score = 96.9 bits (106), Expect = 5e-15 Identities = 198/292 (68%), Gaps = 8/292 (3%) Strand=Plus/Minus Query 77532 GGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATA 77591 |||||||||||||| || ||| ||||||||||| ||||||||||| || || Sbjct 59375 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 59316 Query 77592 ATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAA- 77650 | |||||| | ||| | | ||| |||||| | | || | || || | |||||||| Sbjct 59315 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 59256 Query 77651 -TCTTCCATCT----ATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCT 77705 | ||| || | ||||||| | || | || || |||| ||||||||| ||| Sbjct 59255 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 59196 Query 77706 ACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTG 77765 || |||| | | ||||| | || || ||||||| |||| ||| | ||||| Sbjct 59195 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 59136 Query 77766 CCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAA 77817 || ||||| | ||| || |||| |||||| || || |||||| | ||| Sbjct 59135 CCAAGATTCTTTTGATTAGATTTTTCATTGCAAGAATC--TATAAATATTAA 59086 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 78751 GtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAAT 78810 ||||||||||||||||||||| |||||| | || |||||||| || | ||||||||||| Sbjct 57691 GTTTTTTTGTTTCCTTGTGTAAATTAGAAATTGCAATTCTTGCCGCCAAAATAGCATAAT 57632 Query 78811 CAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTAACTCTATAG 78870 ||||||| | ||| | || || |||| ||||| ||| |||| | || | || Sbjct 57631 CAGGATGATTACAAGTTAGATATGCAGCAGTTTCAGCCGCCAAATTATCAAGTTCCACAG 57572 Query 78871 TTGTGACCCCATTATA 78886 | ||||| || | ||| Sbjct 57571 TGGTGACACCCTGATA 57556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694575584130400