Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1702 435 4e-117 seq717 194 2e-44 seq114 107 3e-18 >seq1702 Length=19207 Score = 435 bits (482), Expect = 4e-117 Identities = 694/985 (70%), Gaps = 8/985 (1%) Strand=Plus/Plus Query 76519 TTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGA-CACATCAATG 76577 |||||||||||| ||||||||||| ||||||||| |||| |||| || || || Sbjct 13518 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAAT-AAAC 13576 Query 76578 ACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAA 76637 ||| | | ||| | | ||||| ||||||||| ||||| | | ||| || ||| || Sbjct 13577 TCCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAAA 13636 Query 76638 ATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCA 76697 ||| ||| || | | | |||||| ||||| ||||| ||||| | ||| | || || | Sbjct 13637 ATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCAA 13696 Query 76698 TAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTC 76757 ||| |||| |||||| | ||||| ||| || || | | ||||| ||||| || |||| Sbjct 13697 AAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCTC 13756 Query 76758 CCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAG 76817 | || || | |||||| || || ||||||||||| | ||||| |||||||| || || | Sbjct 13757 CTTGGTCAACATATCTAGCGGTATTATTATAAACGCGTAACATAGGAATAATTCCATTTG 13816 Query 76818 ATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGC 76877 | |||||||||||||| ||||||| ||| |||||||| ||| ||| | | Sbjct 13817 AATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACAC 13876 Query 76878 CTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCT 76937 | || || ||||| | ||||| || | || || |||||| || |||||||| |||| Sbjct 13877 CAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCCT 13936 Query 76938 CTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTT 76996 |||| |||||| |||| ||||| ||||||||| || || | |||| | | || Sbjct 13937 CTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGTG 13995 Query 76997 CCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTAT 77056 || ||||||||||| || |||||||| ||||| || | ||||| || | |||||||| Sbjct 13996 CCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTAA 14055 Query 77057 GTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATA 77116 ||||||||| | ||||| ||||| | ||||| || || || || ||||| | |||| Sbjct 14056 GTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCATA 14115 Query 77117 TGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTT 77176 || || || || || || || | |||| || | || ||| |||| | |||| Sbjct 14116 TGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGTT 14175 Query 77177 TTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTG 77236 ||||| |||||||| || ||| | | | ||| || ||||| || ||||| ||||| Sbjct 14176 TTAAATCCAAAATAATTATATTTATAATATCTATCATAAATGATCGTAGAATTAAGTTTT 14235 Query 77237 TCCTTATATTTGGTAACAATATCCATGACAGTGGT-AGAAATAATTGGAGATCGTATTCC 77295 ||| || || | ||||||| || | | | |||||| |||| | ||| | || Sbjct 14236 TCCGAATTGTTCATCACAATAT-TATAAGTTTTTTCAGAAATCATTGACGCGCGTTTCCC 14294 Query 77296 ATTTTTAGGATTAACATAGTTAAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGT 77355 |||| ||||| | ||| ||| | | ||||| | || | | ||| | |||||| || Sbjct 14295 TGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTTTAGT 14354 Query 77356 TTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTG 77415 ||| || || ||||| || || || || | |||||| || | |||||||| ||||||| Sbjct 14355 TTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGATGTTT 14414 Query 77416 TGTAGTGCAGGT-GGCTGCTATTTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTC 77474 || || || | || || ||||||| || ||| |||||||||| | ||| |||| | Sbjct 14415 AGTCGT-CATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAACAC 14473 Query 77475 CGTTATATAGCCCTTGAATAACTTT 77499 | | ||| | ||| ||| || || Sbjct 14474 CTTGATAAACTCCTGAAATGACCTT 14498 Score = 178 bits (196), Expect = 2e-39 Identities = 262/367 (71%), Gaps = 8/367 (2%) Strand=Plus/Plus Query 75709 AGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATA 75768 ||| ||||||||||||||||| |||| | || | ||| |||||| || || ||||| Sbjct 12490 AGGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATA 12549 Query 75769 TGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGC 75828 ||||| | | ||||||| ||||| ||||| | ||| || ||||| ||||| ||||| Sbjct 12550 AGGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGC 12609 Query 75829 CACCAATAAACTATTTCTGAGACCATGTGTTCTG--ATTTTATCTTTTAGATATTTCCAA 75886 | |||||| ||||| | |||| ||||||| ||||| | ||| | | |||||| Sbjct 12610 GAGCAATAATGAATTTCGTACACCA--TGTTCTGATATTTTTTGTTTCAACAAATTCCAA 12667 Query 75887 TCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCA 75946 ||||| | ||| | || |||||| ||| | ||||||||||| ||| || ||| | | Sbjct 12668 TCCCATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACC 12727 Query 75947 TATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCT 76006 |||||| | ||| | || || | ||| |||| | |||||| || || ||| Sbjct 12728 GGTGATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCT 12787 Query 76007 AACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATC--TTGCGCTTCAAGAC 76064 || ||||| | ||| ||||| || || || | |||||| || || |||||| | |||| Sbjct 12788 AATGCACCATGATACATTGTCTCAAATATTTGCTTATTCAGTTCCTTTGCGCGTAAAGA- 12846 Query 76065 TATCAAA 76071 |||||| Sbjct 12847 -ATCAAA 12852 >seq717 Length=48811 Score = 194 bits (214), Expect = 2e-44 Identities = 362/523 (69%), Gaps = 23/523 (4%) Strand=Plus/Minus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 ||||||||| |||||| || || ||| ||||| || || ||||| ||||| |||| Sbjct 5115 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 5056 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATA-AAtttttttAAATC 46444 || || |||||||||||||| ||||| |||||| |||||| | | | Sbjct 5055 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-C 4997 Query 46445 CTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCAT-TTCACAA 46503 | | | | | | |||||| || || ||||| ||||| ||||||| | ||| | Sbjct 4996 CAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG- 4938 Query 46504 TTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACA 46563 ||||| || || | || || |||| || || || | ||| |||||||| || || || Sbjct 4937 TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACC 4878 Query 46564 GCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGA-----TGCATCAA-ATGT 46617 || |||| ||| || | | ||| |||| ||| |||| |||| || ||| Sbjct 4877 GCTTCCGCTATAATAGCTTCTACAGTTT------TTGTTGGAGGTCGTGCACGAAGATGA 4824 Query 46618 TTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTA 46677 | || | | |||||||||||||||||| | |||||||||| | ||||| |||||| Sbjct 4823 GTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTG 4764 Query 46678 GAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT 46737 ||||| || | || ||||| | ||| | || || | |||||| || | |||||||| | Sbjct 4763 GAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCT 4704 Query 46738 CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTG--G 46795 |||||||||||||| ||||| ||||| || || || ||||| | || | || || | Sbjct 4703 CCAGAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG--ACGTTCAGCAAATGAAG 4646 Query 46796 CATCATTAT---GAATCCACCTTTGAGCCCAATCAGCCTTTTT 46835 || |||| |||||| | |||||||||| || ||||| Sbjct 4645 ATTCCTTATCGGAAATCCATCGAAGAGCCCAATCCGCTTTTTT 4603 Score = 167 bits (184), Expect = 3e-36 Identities = 208/282 (74%), Gaps = 10/282 (4%) Strand=Plus/Minus Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 |||||||||||||| || ||||| || ||||||||||| ||||||||||||||||| Sbjct 4438 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 4379 Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTA 47040 | ||| || || || ||| ||| ||||| ||||| ||||| || || ||||| Sbjct 4378 GGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAG 4319 Query 47041 GCAGCAAAAAATGCCAATACATGTTTAATAAAATATTT---TTCATCGGTAGTCAGTTTA 47097 || ||||| || ||||| || || |||||| |||| ||||||| || |||||| Sbjct 4318 GCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCATCGTTA---AGTTTA 4262 Query 47098 ---TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCC 47154 | ||| ||||| ||||| || || | || ||||| ||| | ||||| ||||| || Sbjct 4261 TACTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCT 4202 Query 47155 TCTGCTTTTTTATACATATTCCATATAT-CACGATATTGGAT 47195 || || ||||| ||||| | ||| || | ||| ||||| ||| Sbjct 4201 TCGGCCTTTTTGTACATTTGCCAGATCTACACAATATTTGAT 4160 >seq114 Length=70618 Score = 107 bits (118), Expect = 3e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 76943 CTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 77002 |||||||| |||| | | | ||| || || |||||||| | || || ||| Sbjct 58257 CTATCATCTTTCATTTGCACTAAAAAGCAACTTGACATTTGTGGTCTTGGTGTACCAGCA 58198 Query 77003 TTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCA 77062 |||||||| || ||| ||||||||| || |||| || || | || ||| || |||||| Sbjct 58197 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 58138 Query 77063 ATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGA 77122 ||| |||| || ||||| | ||||||||| | || |||||||||||||| || || Sbjct 58137 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 58078 Query 77123 GGTCGTTCTACA 77134 |||| ||| ||| Sbjct 58077 GGTCTTTCAACA 58066 Score = 95.1 bits (104), Expect = 2e-14 Identities = 176/257 (68%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 76127 GGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATA 76186 |||||||||||||| || ||||||||||||||| || |||||||| ||| || Sbjct 59375 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 59316 Query 76187 ATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA- 76245 | |||||| | ||| | | ||| |||||| | | || | || || | |||||||| Sbjct 59315 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 59256 Query 76246 -TTTTCCATCTATCACAAACATATTAAG----AGCTATAGATGCTAGATTACAAACGGCT 76300 ||||| || | | |||| ||| || | || || |||| ||||||||||||| Sbjct 59255 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 59196 Query 76301 ACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTT 76360 || |||| | | ||||| | || || || |||| |||| || | ||||| Sbjct 59195 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 59136 Query 76361 CCAAGATTTTGTTGGTT 76377 |||||||| | ||| || Sbjct 59135 CCAAGATTCTTTTGATT 59119 Score = 95.1 bits (104), Expect = 2e-14 Identities = 134/187 (72%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 75721 TTGAAATTCTCCAGACAATAC---TCTTCGAGTGTAAATATTACTGGTATATGGTTCCAC 75777 ||||||||| ||| ||||| |||| || |||||||| || || |||||||| | Sbjct 59947 TTGAAATTCCCCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGTTCAAA 59891 Query 75778 AGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAA 75837 ||||||||||||| | ||| ||| || || ||||| ||||| ||||| | ||| || Sbjct 59890 GCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATCAACAA 59831 Query 75838 ACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATC 75897 | ||||| | |||| | ||||| || ||||| | | | ||| ||||| |||| Sbjct 59830 AGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCATCGATC 59771 Query 75898 TGATGGT 75904 ||| ||| Sbjct 59770 TGAAGGT 59764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712838733115200