Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq865 136 9e-27 seq202 129 1e-24 seq2141 118 2e-21 seq498 98.7 2e-15 >seq865 Length=39574 Score = 136 bits (150), Expect = 9e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| ||||| ||||| |||||||| |||||||| | || || | ||||| Sbjct 10175 GAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATC 10116 Query 151952 TTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 ||| | ||| ||||| ||||| |||| | ||||| |||| | || ||||| || | Sbjct 10115 TTCCAATTGTTTACCGGCAAAGATCAAGCGT-TGCTGATCCGGGGGAATGCCTTCTTTGT 10057 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| || ||| || || | | | ||||| |||||||||||||||||||| Sbjct 10056 CTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAG 9997 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || |||||||| ||||| | ||||| Sbjct 9996 TTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 9963 >seq202 Length=70977 Score = 129 bits (142), Expect = 1e-24 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || ||||| ||||| || || ||||| || || || || | |||||| | |||||| Sbjct 31277 AGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCT 31218 Query 151953 TCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || | ||| ||||||||||| |||| | || || || | | ||| |||||||| || Sbjct 31217 TCCAATTGTTTACCGGCGAAGATCAAGCGT-TGTTGATCTGGGGGGATACCTTCCTTATC 31159 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||| ||| ||| || |||| | | || || ||| |||||||||||||| || Sbjct 31158 TTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGT 31099 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || ||||||||||| ||||| | ||||| Sbjct 31098 TTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 31066 Score = 118 bits (130), Expect = 2e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| ||||| || |||||||| || || ||||| | || || | ||||| Sbjct 31050 GAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATC 30991 Query 151952 TTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 ||||| ||| || |||||||| |||| | || || || | | ||| ||||| || | Sbjct 30990 TTCTAATTGTTTACCAGCGAAGATCAAGCGT-TGTTGATCTGGAGGGATACCTTCTTTAT 30932 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| || ||| || |||| | | || || ||| |||||||||||||| | Sbjct 30931 CTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTG 30872 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || ||||| ||||| ||||| | ||||| Sbjct 30871 TTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 30838 Score = 113 bits (124), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| ||||| || |||||||| ||||| || || | || || | ||||| Sbjct 30822 GAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATC 30763 Query 151952 TTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 ||||| ||| || |||||||| |||| | || || || | | ||| ||||| || | Sbjct 30762 TTCTAATTGTTTACCAGCGAAGATCAAGCGT-TGTTGATCTGGGGGGATACCTTCTTTAT 30704 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 ||||||| ||| ||| || |||| | | || || ||||||||||||||| || | Sbjct 30703 CTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTG 30644 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || || || || ||||| | ||||| Sbjct 30643 TTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 30610 Score = 107 bits (118), Expect = 4e-18 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||| ||||| || |||||||| || || ||||| | ||||| | |||||| Sbjct 30594 GAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATC 30535 Query 151952 TTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 ||| | ||| || |||||||| |||| | || || || | | ||||||||||| | Sbjct 30534 TTCCAATTGTTTACCAGCGAAGATTAAGCGT-TGTTGATCTGGAGGAATTCCTTCCTTAT 30476 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC--TGAACTCTCTACTTCAAGAGTAAT 152068 ||||||| ||| ||| || || | | || || | ||| |||||||| ||||| Sbjct 30475 CTTGAATCTTTGCTTTAACTTGATCAATAGTATCATTGGA--CTCGACTTCAAGGGTAAT 30418 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || || ||||| ||||| | ||||| Sbjct 30417 GGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 30382 >seq2141 Length=12878 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| || || ||||||||||| ||||||||||| ||||| ||||| | | || | Sbjct 5121 AGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGA 5062 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || ||||| || ||| || ||||| ||||| | |||||||| | | |||||||| Sbjct 5061 CCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCT 5002 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||||||| ||| || || | |||| ||| || |||||||| || Sbjct 5001 TTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTG 4942 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || || ||||||| ||||| Sbjct 4941 ATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 4904 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || ||||||||||| || |||||||| || ||||| |||| | |||| ||||| Sbjct 5344 GAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATC 5285 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || ||| || ||||| || || | |||||||| | | ||| || ||||| || Sbjct 5284 CTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATC 5225 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||||||| ||| || || | | | || || |||||| || | || || || Sbjct 5224 TTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGT 5165 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||| ||||| ||||| ||||||| ||||| Sbjct 5164 TTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 5132 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | |||||| || ||||||||||| || ||||| || | | |||| ||||| Sbjct 5571 AGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCC 5512 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| |||||||| || || | ||||| || | | || ||||| || ||| Sbjct 5511 TCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCT 5452 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| ||| || || | | | || ||| ||| ||||| | |||||| ||| Sbjct 5451 TGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTT 5392 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || || | ||||| Sbjct 5391 TTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 5360 Score = 84.2 bits (92), Expect = 5e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || |||||||| || |||||||||||||| ||||| | | ||| | Sbjct 5806 GAGACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACG 5747 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| | || || ||||| || | | ||||| || | | ||| || || Sbjct 5746 ACCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATACCCTC 5687 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || ||||||||||| ||| || || | | | || || || || ||||| || Sbjct 5686 TTTATCTTGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGT 5627 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || || || || || || || | ||||| Sbjct 5626 AATCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 5588 >seq498 Length=39471 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC--CCATCTTCTAGGCTTTTCC 151965 || || |||||||| || |||||||||| ||||| | |||||||||| ||| | Sbjct 34860 GTTGATTCTTTTTGAATATTGTAATCGG--AAAGTGAACGTCCATCTTCTAACTGTTTAC 34803 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 | || || || | | || || |||| | ||||||||| || ||||||||||||| || Sbjct 34802 CAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGAATTTTTTCTT 34743 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 |||| | || | | | || ||| || ||||| | |||||| ||||| || || || | Sbjct 34742 TGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTG 34683 Query 152086 TCTTCACGAAGACCTGCATTTT 152107 | || || || | ||||| || Sbjct 34682 TTTTAACAAAAATTTGCATGTT 34661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153662100963185