Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2141 168 1e-36 seq202 150 4e-31 seq865 132 1e-25 seq498 127 4e-24 seq346 93.3 9e-14 seq1933 86.0 1e-11 >seq2141 Length=12878 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || ||||| |||| ||| | || |||||||| || |||||||||| Sbjct 5587 ACCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGA 5528 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || |||||||| |||||||| ||||| || || | |||||| || || || Sbjct 5527 AAGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGG 5468 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| || |||||||| |||||||||||||| |||||| || || |||| || || Sbjct 5467 AATACCTTCTTTGTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAAC 5408 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| | ||| || || || || || | ||| ||||| || || ||||| Sbjct 5407 TTCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 5360 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || || || || ||||| | ||| ||||||||| || |||||||| | Sbjct 5359 ACCGCCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGA 5300 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || |||||||| |||||||| || || || || | |||||| ||||| || Sbjct 5299 AAGGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGG 5240 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||||||||| ||||| || || | |||||| ||||| || ||||| | || || Sbjct 5239 GATACCCTCCTTATCTTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTAC 5180 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| || || || || | ||||| ||||| || ||||| Sbjct 5179 GTCCAAGGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 5132 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || || || || | || ||||||||||||||| || || | Sbjct 5815 ACCACCACGGAGACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGA 5756 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || || ||||| || | ||| || || || || ||||||||||| || || || Sbjct 5755 AAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGG 5696 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||| || ||||| || || | ||| || ||| || || || || | |||||| Sbjct 5695 GATACCCTCTTTATCTTGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGAC 5636 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || || ||||||||||| || | || || || || || ||||| Sbjct 5635 CTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 5588 >seq202 Length=70977 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | | |||||||| ||||| | || ||| ||||| || || ||||| | Sbjct 31293 ACCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGA 31234 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || |||||||| || | |||||| ||||| |||||||| |||||||| || || Sbjct 31233 TAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGG 31174 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| ||||| ||||| ||||||||||| || ||| || || || || | ||||| Sbjct 31173 GATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGAC 31114 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||| || || ||||| || | |||||| ||||| || ||||| Sbjct 31113 TTCAAGAGTAATTGTTTTACCGGTGAGAGTCTTGACGAAAATTTGCAT 31066 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | | || ||||| ||||| | ||| ||||||||| ||||| ||||| | Sbjct 30837 ACCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGA 30778 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| |||| |||||| || || |||||||| |||||||| || || Sbjct 30777 CAATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGG 30718 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||||| || || ||||| ||||||||||| || || || || || || | || || Sbjct 30717 GATACCTTCTTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTAC 30658 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| |||||||| || ||||| |||| || |||||||| || ||||| Sbjct 30657 TTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 30610 Score = 132 bits (146), Expect = 1e-25 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || |||||||| ||||| | || ||||||||| || || || || | Sbjct 31521 ACCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGA 31462 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || | |||||| || || |||||||| ||||| || || || Sbjct 31461 TAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGG 31402 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||| ||||| ||||| ||||||||||| || || || || || || | || || Sbjct 31401 AATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAAC 31342 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || || || || ||||| || | ||||| ||||| || ||||| Sbjct 31341 TTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 31294 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| | | || ||||| ||||| | || ||||||||| || || || || | Sbjct 30609 ACCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGA 30550 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || | |||||| || || ||||| || |||||||| || || Sbjct 30549 CAAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGG 30490 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| ||||| ||||||||||| || ||| ||||| || | ||||| Sbjct 30489 AATTCCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCAATAGTATCATTGGACTCGAC 30430 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| || || || || || || || | ||||| |||||||| ||||| Sbjct 30429 TTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 30382 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 |||| || || |||||||| ||||| || || || ||||| || |||| ||| |||| Sbjct 30065 TACCTTCTTTATCTTGGATTTTTGCCTTGACTTGGTCAATAGTATCTGAAGATTCAACTT 30006 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||||| || ||||| || || | |||||| ||||| || ||||| || Sbjct 30005 CGAGAGTAATGGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATGTT 29957 >seq865 Length=39574 Score = 132 bits (146), Expect = 1e-25 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 || |||||||| ||||| || | |||| || || ||||| || | |||||| |||||||| Sbjct 10153 TCCTTTTGGATATTGTAATCTGACAAG-GTACGTCCATCTTCCAATTGTTTACCGGCAAA 10095 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 |||||| ||||| || || ||||| || || |||||||| ||||| ||||| || Sbjct 10094 GATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTG 10035 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 || || || || || | || ||||| ||||| || || ||||| || | ||||||||| Sbjct 10034 GTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAAC 9975 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 9974 GAAAATTTGCAT 9963 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| || ||||||||||| || |||| || || || ||||| |||| ||| ||| Sbjct 9754 ATACCTTCTTTGTCTTGGATTTTGCCTTTGACTTGGTCAATGGTGTCAGAAGATTCAACT 9695 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || |||||||| ||||| || || | |||||| ||||| || ||||| || Sbjct 9694 TCAAGAGTGATAGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCATGTT 9645 >seq498 Length=39471 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || | |||||||||| ||||| || ||||||||| || ||||| || | | Sbjct 34890 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 34831 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || | || ||||| |||| ||||| || ||||| || ||||||||||| || || Sbjct 34830 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 34771 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || || ||||| || ||| |||| || ||||||| || || | ||| ||| Sbjct 34770 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 34711 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | ||| || || ||||| || | || ||||| || || ||||| || Sbjct 34710 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTT 34661 >seq346 Length=59818 Score = 93.3 bits (102), Expect = 9e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 282994 TACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTT 283053 ||||||| || ||||| ||||| | || || | ||| |||||||| || | || || | Sbjct 40915 TACCCTCTTTATCTTGTATCTTGGTCTTGACAGCATCAATAGTGTCGGATGACTCAACCT 40974 Query 283054 CGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | || ||||| ||||||||||||||||| || ||||| |||||||| Sbjct 40975 CAAGGGTGATAGTCTTACCCGTCAAAGTTTTCACGAAAATCTGCAT 41020 >seq1933 Length=16258 Score = 86.0 bits (94), Expect = 1e-11 Identities = 93/123 (76%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 282977 TTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGT 283036 |||||| ||| ||| | || |||| |||||| ||||||| || || ||| ||||| Sbjct 4134 TTGTTGATCA---GGAGAAACCACCTTATCTTGGGTCTTTGCCTTGACTTGATCAATAGT 4078 Query 283037 GTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096 || |||| ||| |||||||||||||| ||||| || | | ||| || || || ||||| Sbjct 4077 ATCAGAAGATTCAACTTCGAGAGTGATAGTCTTTCCAGCAAGAGTTTTTACAAAAATCTG 4018 Query 283097 CAT 283099 ||| Sbjct 4017 CAT 4015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046595229200690