Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593155.1_202016-03- 16] 10,735 sequences; 122,873,294 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2141 165 2e-35 seq498 150 4e-31 seq865 145 2e-29 seq202 141 2e-28 seq446 91.5 4e-13 seq730 87.8 4e-12 >seq2141 Length=12878 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| ||||| || || ||||| || |||||||| || || ||| || ||| Sbjct 4907 CAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCCGAC 4966 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || | || ||| ||| ||||| |||||||||||||| || || ||||||||| Sbjct 4967 ACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAGCAA 5026 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||| ||||| || ||||| || ||||| || | || ||| | ||||||||| | Sbjct 5027 CGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAACATT 5086 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||| ||||| || ||||| || Sbjct 5087 CAAAAAGAGTCAACTCTTCATCTAGT 5112 Score = 147 bits (162), Expect = 5e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||||| || |||||||| || || | || || || || || Sbjct 5363 CAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCCGAT 5422 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| | || ||| ||||||||| ||||||||||| || || || || |||||| Sbjct 5423 ACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAGCAA 5482 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| ||||| || || |||||| | || ||| | || || || | Sbjct 5483 CGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAATATT 5542 Query 178104 CAAAAAGAATCAACACTGCAT 178124 |||||||| |||||||| ||| Sbjct 5543 CAAAAAGAGTCAACACTTCAT 5563 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || || || ||||| ||||| ||||| ||| || || Sbjct 5591 CAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCTGAT 5650 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| || ||||| || ||||| || |||||||| || |||||| Sbjct 5651 ACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGTATCCCTCCAGATCAGCAA 5710 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || || || | |||||||| | |||||| | ||||||||| || Sbjct 5711 CGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAACATC 5770 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||||||||| || || || || Sbjct 5771 CAAAAAGAATCAACTCTTCACCTCGT 5796 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| || ||||| |||||| | || || || ||| || Sbjct 5135 CAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCGGAT 5194 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| | || ||| || ||||| || || || || ||||| || ||||||||| Sbjct 5195 ACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAGCAA 5254 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || ||||| || || |||||| | || ||| |||| || || | Sbjct 5255 CGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAATATT 5314 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 ||||||||||| || || ||||| ||| Sbjct 5315 CAAAAAGAATCCACTCTTCATCTCGTT 5341 >seq498 Length=39471 Score = 150 bits (166), Expect = 4e-31 Identities = 157/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || || ||||| || || | || || ||||| || Sbjct 34667 CAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGCGAT 34726 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| |||| ||||| || |||||||||||||| ||||| || ||| Sbjct 34727 ACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGATCAACAA 34786 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || |||||| | ||||||||| | | ||| ||||||| || | Sbjct 34787 CGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTCCGATTACAATATT 34846 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||||||| | || |||| Sbjct 34847 CAAAAAGAATCAACATTACA-CTTG 34870 >seq865 Length=39574 Score = 145 bits (160), Expect = 2e-29 Identities = 158/207 (76%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||||| || || ||||| || || || || || || |||||| Sbjct 9966 CAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCAGAT 10025 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| |||||||| ||||||||||| || || ||||| |||||| Sbjct 10026 ACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAGCAA 10085 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| ||||| ||||| | ||||||||| | || |||| | ||||| || | Sbjct 10086 CGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTAC-CTTGTCAGATTACAATAT 10144 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 |||||| || ||||| || ||||| || Sbjct 10145 CCAAAAGGAGTCAACTCTCCATCTCGT 10171 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || ||||| || ||||| || || || || || ||| || || Sbjct 10194 CAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCTGAT 10253 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || | ||||| ||||||||| ||||||||||| |||||||| || || ||| Sbjct 10254 ACAATTGAACAAGTCAAGACAAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAACAA 10313 Query 178044 CGACTTATCTTCGCCGGAAAACAG 178067 || | || || || || |||||| Sbjct 10314 AGATTGATTTTTGCTGGCAAACAG 10337 >seq202 Length=70977 Score = 141 bits (156), Expect = 2e-28 Identities = 155/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| || ||||| || || || ||| || Sbjct 31297 CAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCTGAT 31356 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| ||||||||| || || ||||| || ||||| || |||||| Sbjct 31357 ACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAGCAA 31416 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | ||| | | |||||||| | Sbjct 31417 CGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAATATT 31476 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || ||||| || Sbjct 31477 CAAAAAGAATCTACTCTCCATCTCGT 31502 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| || || || ||||| ||||| || || || || ||| || Sbjct 30613 CAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCTGAT 30672 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| ||||||||| || |||||||| ||||| || || || ||| Sbjct 30673 ACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAACAA 30732 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | || | | || |||||| | Sbjct 30733 CGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAACATT 30792 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || ||||| || Sbjct 30793 CAAAAAGAATCCACTCTCCATCTCGT 30818 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| || || || || || || ||| || Sbjct 30841 CAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTGAT 30900 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| |||||||| || |||||||| |||||||| || || ||| Sbjct 30901 ACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAACAA 30960 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | || | | |||||||| | Sbjct 30961 CGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAGATTATAATATT 31020 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||||||||| || ||||| || Sbjct 31021 CAAAAAGAATCAACTCTCCATCTCGT 31046 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || |||||||| || ||||| || || || || || || ||| || Sbjct 31069 CAAATTTTCGTCAAGACTCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTGAT 31128 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || | || ||| ||||||||| || || ||||| ||||| || || || ||| Sbjct 31129 ACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAACAA 31188 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||||||||| ||||| | |||||||| | ||| | | || ||||| | Sbjct 31189 CGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAATATT 31248 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| |||||||| || ||||| || Sbjct 31249 CAAAAGGAATCAACTCTCCATCTCGT 31274 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || || ||||| || ||||| || || || | || Sbjct 30385 CAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAATGAT 30444 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || | || ||| ||||||||| || || |||||||| ||||| || || ||| Sbjct 30445 ACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAACAA 30504 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| || ||||| | |||||||| | ||| | | |||||||| | Sbjct 30505 CGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAATATT 30564 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 |||||||||||||| || ||||| || Sbjct 30565 CAAAAAGAATCAACTCTCCATCTCGT 30590 >seq446 Length=157017 Score = 91.5 bits (100), Expect = 4e-13 Identities = 151/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 177925 AAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCAG 177981 ||||||| |||||||| | || |||||||| | | ||| || | || |||| | Sbjct 26052 AAATTTTTGTGAAAACATTGACCGGAAAAACAGTTATCCTAGATTTTGATTCAAGC---G 26108 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || | | ||| ||| | || | |||||||| || ||||| ||||||| Sbjct 26109 ACACTATTGATATGATTAAATCTAAGGTCGAGAAAAAAGAAGGCATTCCTCCTGACCAGC 26168 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 |||| |||| || || || || || | || ||||||| ||| | | |||| ||| Sbjct 26169 AACGTATTATTTTTGCTGGTAAGCAATTGGAGGATGGAAAAACTTTATCAGATTGTAATA 26228 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 | ||| |||| || || |||||||||| | ||||| Sbjct 26229 TTCAAGAAGAGTCTACGTTGCATCTTGTACTTAGACT 26265 >seq730 Length=35671 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||| | |||||||||||||| ||||| || || ||||| ||||| || || || | Sbjct 18606 AAGATTTATGACAAAGAAGGAATTCCTCCTGATCAACAACGCCTTATTTTTGCTGGCACG 18547 Query 178065 CAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGAATCAACACTGCA 178123 || | ||||| ||| | || |||| | |||||| | |||||||||| | ||| | || Sbjct 18546 CAATTAGAAGAAGGACGTAC-CTTGTCAGATTATTATATCCAAAAAGAGTGCACAATTCA 18488 Query 178124 TCTTGTTTTGAGACT 178138 |||||| | ||||| Sbjct 18487 TCTTGTACTTAGACT 18473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203565636177590