Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq219 100 2e-16 >seq219 Length=63677 Score = 100 bits (110), Expect = 2e-16 Identities = 253/380 (67%), Gaps = 5/380 (1%) Strand=Plus/Minus Query 18971 AATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAA--CGGTGA-ATT 19027 ||||| | |||| |||||||| | ||| || || || || || |||| || | ||| Sbjct 20392 AATGGCATTACCACCATGTCATATGTTTTGCCAATTCTATGTATCAAATACGAAAAGATT 20333 Query 19028 ATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGC 19087 ||| || | | || || ||||| | ||| | || ||||| ||||| || |||||||| Sbjct 20332 ATCGTGTCTTCTTTATCAAAGATCATGTGATGTTGGACTTGGTGTACCATTTAACATTGC 20273 Query 19088 TGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTT 19147 | ||||| | | || | || | || ||||| || || || | || || || Sbjct 20272 AAGCTATGCTATATTAACTCATATGATTGCTCATGTAACGGGTTGTAGTCCTGGTGAATT 20213 Query 19148 AATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCA 19207 |||||||| ||||| ||| | ||||| || ||||||| ||||||||||| || Sbjct 20212 TATTCATACCATGGGTGATACTCATATATATAATGATCATATTAATGCTTTAAAAACTCA 20153 Query 19208 GCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCG-AAATGTAACAGATA 19266 | | || |||||| | |||||| | | ||| ||| || ||| ||| | ||| Sbjct 20152 AATCGAACGTGAACCAAAAGCATTTCCTCGTTTGAAATTTAGACGCAAAATTAATA-ATA 20094 Query 19267 TAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTAA 19326 | | || ||||||| || |||||| || ||| ||| | || || || | | | Sbjct 20093 TTGATGATTTTAAATATGATGATTTTATTATTACTGGTTATGAACCTCATCCTCAAATCA 20034 Query 19327 AAATGGAAATGGCTCTTTAA 19346 ||||| ||||| || | ||| Sbjct 20033 AAATGAAAATGTCTGTATAA 20014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399433517007420