Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1330 338 7e-88 seq3144 179 4e-40 seq453 102 1e-16 >seq1330 Length=20794 Score = 338 bits (374), Expect = 7e-88 Identities = 675/989 (68%), Gaps = 16/989 (2%) Strand=Plus/Plus Query 53950 TTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA-CACATCAACG 54008 |||||| || || |||||||||| || |||||| |||| ||||| || || ||| Sbjct 17082 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 17141 Query 54009 ACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 54067 | | | || | | |||| | | ||||||||| ||||| | || |||||| || | Sbjct 17142 CCAATTATCATT--TGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAA 17199 Query 54068 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 54127 |||| ||| | | | | ||| || ||||| ||||| ||||| | ||| | || | Sbjct 17200 AATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCA 17259 Query 54128 ATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCT 54187 | ||| |||| |||||||| ||| || || || | | | || || |||||||||||| Sbjct 17260 AAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCT 17319 Query 54188 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 54247 || ||||| | |||||||| || ||||||||||| | ||||| |||||||| ||||| Sbjct 17320 CCTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCATTT 17379 Query 54248 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 54307 || |||||| || || | ||||| ||| | |||||||| ||| ||| | | Sbjct 17380 GAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACA 17439 Query 54308 CCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 54367 || || || ||||| | ||||| || | ||||||| ||| || ||||||||||| ||| Sbjct 17440 CCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCC 17499 Query 54368 TCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 54426 ||||| |||||| |||| ||||| |||||||| || || | ||| | | | || Sbjct 17500 TCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGT 17558 Query 54427 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 54486 || |||||||| || || ||||| ||||| ||||| | ||||| || | |||||||| Sbjct 17559 GCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTA 17618 Query 54487 CGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 54546 || || ||||| | || ||||| | ||||| || || || || ||||| | ||| Sbjct 17619 AGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCAT 17678 Query 54547 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGT 54606 || || || | || | | || |||| | | || ||| |||| | ||| Sbjct 17679 ATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGT 17738 Query 54607 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTT 54666 |||||| |||||||| || ||| | | |||| || ||||| || || || ||||| Sbjct 17739 TTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAGTTT 17798 Query 54667 ATCCTTATATTTGTTAACTACATCCATGGTAATACTT----GAAATAATCGGAGAATGTT 54722 ||| | ||||| | ||| || ||| || ||||| || | | ||| Sbjct 17799 TTCC---GAATTGTTCATCACA-ATATTATAAGTTTTTTCAGAAATCATTGACGCGCGTT 17854 Query 54723 TCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATC-ACTTCACTAAATAGtttt 54781 |||| |||| ||||| | ||| ||| | | || ||||| | || | ||| | |||| Sbjct 17855 TCCCTGTTTTCGGATTTATATAATTATAAAGAT-CTTCAACAACATTGGAAAAAACTTTT 17913 Query 54782 tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGA 54841 || |||||||| || ||||| || || || || | ||| || || | |||||| |||||| Sbjct 17914 TTAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGA 17973 Query 54842 TGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCAATTCTACCGTTGTT 54901 |||| || || | || || |||| || | || | | || ||||| || || | Sbjct 17974 TGTTTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTA 18033 Query 54902 ACTCCATTATATATTCCTTGGATAACCTT 54930 || || | ||| | |||| || ||||| Sbjct 18034 ACACCTTGATAAACTCCTGAAATGACCTT 18062 Score = 118 bits (130), Expect = 1e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 53690 ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 53749 ||||||||| |||||| ||| |||| ||||| || || || |||| | || | Sbjct 16751 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 16810 Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 |||| | ||||| || || | ||||||||| ||||| || || | ||||||||||||| Sbjct 16811 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 16870 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 || ||||| | ||| || || || || |||| ||||| ||||| ||||||||| Sbjct 16871 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 16930 Query 53870 TCTATAATCGCTTTCCAGAC 53889 || | ||| ||| ||||||| Sbjct 16931 TCAAGAATTGCTGTCCAGAC 16950 >seq3144 Length=5517 Score = 179 bits (198), Expect = 4e-40 Identities = 218/294 (74%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 || || | ||| | ||||||||| || |||||||| ||||| || ||||| || Sbjct 4382 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 4323 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCT 24515 || |||||||| || |||||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 4322 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 4263 Query 24516 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 24575 ||||||||||||| || || || || ||| ||||| || ||||| || || ||| Sbjct 4262 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 4203 Query 24576 AAATATTTTTCGTC-TGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATATATC 24631 || ||||||| || | || | |||||| | ||||||||| ||||| || || | || Sbjct 4202 AAGAATTTTTCTTCATCGT-TAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 4144 Query 24632 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 24685 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| Sbjct 4143 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGAT 4090 Score = 176 bits (194), Expect = 5e-39 Identities = 322/463 (70%), Gaps = 8/463 (2%) Strand=Plus/Minus Query 23831 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 23890 ||||||||| |||||| || || || |||||||| || ||||| |||||||||| Sbjct 5029 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 4970 Query 23891 TAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCC 23950 ||| || ||||| ||||| | ||||| |||||| | | ||| | Sbjct 4969 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAAT-TTTGCTCCAC 4911 Query 23951 CAATT--CAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCAT-TTCACA 24007 ||| | || ||| |||||||| || ||||| || |||||| ||||||| | ||| | Sbjct 4910 CAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCG 4852 Query 24008 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 24067 ||||| || || | |||||||| | || | || | |||||||||||| || | || Sbjct 4851 -TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAAC 4793 Query 24068 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAA-ATGTTTAA 24126 ||| || | |||||||| | ||| |||| | ||| | | || || ||| | | Sbjct 4792 CGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTGA 4734 Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 | | | |||||| ||||| || || | || || |||| | ||||| ||||||||||| Sbjct 4733 ATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAA 4674 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246 | || | ||| ||||| | || | || || | |||||| || ||||| || | ||||| Sbjct 4673 AAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAG 4614 Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTC 24289 ||||||| |||||||| || || ||||| || | ||| | ||| Sbjct 4613 AAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTC 4571 >seq453 Length=43245 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 54374 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 54433 |||||||| |||| | | || ||| ||||| |||||||| | | || || ||| Sbjct 30221 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 30162 Query 54434 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCG 54493 ||||| || || ||| || || ||||| |||| || || | || ||| || || || Sbjct 30161 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 30102 Query 54494 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 54553 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 30101 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 30042 Query 54554 GGTCTTTCAAC 54564 ||||||||||| Sbjct 30041 GGTCTTTCAAC 30031 Score = 91.5 bits (100), Expect = 2e-13 Identities = 194/286 (68%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 53558 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 53617 |||||||||||||| ||| ||||||||||||||| ||||||||||| ||| || Sbjct 31339 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 31280 Query 53618 ATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 53676 | |||||| | || | | || ||||| | | || | || || | |||||||| Sbjct 31279 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 31220 Query 53677 -TTGTCCAT---CTATT-ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCT 53731 || || || |||| ||||| | |||| ||| || || | ||||||||||||| Sbjct 31219 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 31160 Query 53732 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 53791 || |||| | | | ||||| | || ||||| || | |||| || | || || Sbjct 31159 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 31100 Query 53792 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 53837 || | ||| | ||||||| |||| || || | ||| |||||| Sbjct 31099 CCAAGATTCTTTTGATTAGATTTTTCATTGCAAGAATC--TATAAA 31056 Score = 82.4 bits (90), Expect = 9e-11 Identities = 134/192 (70%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 53147 ACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATACGGT 53203 |||||||||||||| ||| ||||| ||| || |||||||| || || || ||| Sbjct 31915 ACTACTTGAAATTCCCCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGT 31859 Query 53204 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 53263 || | | ||||| ||||| | ||| ||| || |||||||| ||||| ||||| | | Sbjct 31858 TCAAAGCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATC 31799 Query 53264 AATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAA 53323 || ||| ||||| | || ||| ||||| || ||||| | | |||| | ||| Sbjct 31798 AACAAAGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCAT 31739 Query 53324 AGATCCGACGGT 53335 |||| || ||| Sbjct 31738 CGATCTGAAGGT 31727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593614166076480