Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2123 125 7e-24 >seq2123 Length=30488 Score = 125 bits (138), Expect = 7e-24 Identities = 156/214 (73%), Gaps = 10/214 (5%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| |||||||| || ||||| ||||||||||||||| | ||||| || || | Sbjct 15249 ATGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 15190 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAA-----ATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || | | | || |||| ||||| |||| || || ||||| |||||| | | Sbjct 15189 GATACCAT-----CGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAG 15135 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 |||||||||| ||||| | ||| || ||||| || || || | || ||||| ||||| Sbjct 15134 ACCAGCAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACT 15075 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||| || || || || |||| || ||||| || Sbjct 15074 ACAATATTCAAAAAGAATCCACTCTTCATCTCGT 15041 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| || || || || || |||||| | || || ||| | || Sbjct 15477 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 15418 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | || | |||||||| |||||||| || || ||| | |||||| Sbjct 15417 GACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAG 15358 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || || | ||| |||||||| || || |||| || ||||| || || ||| Sbjct 15357 CAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAAC 15298 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || || || ||| | || || |||||||| Sbjct 15297 ATTCAAAAAGAGTCAACTCTTCATCTAGT 15269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515125971085760