Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq219 134 1e-26 >seq219 Length=63677 Score = 134 bits (148), Expect = 1e-26 Identities = 172/232 (74%), Gaps = 5/232 (2%) Strand=Plus/Plus Query 97047 AGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGG 97106 ||||| ||| |||| ||| || |||| ||| || | || ||||||||||| ||||| Sbjct 20164 AGCATTAATATGATCATTATATATATGAGTATCACCCATGGTATGAATAAATTCACCAGG 20223 Query 97107 AACTA-AATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAA 97165 |||| || | || ||||| || |||||| |||||||| || |||||| |||||||||| Sbjct 20224 -ACTACAACCCGTTACATGAGCAATCATATGAGTTAATATAGCATAGCTTGCAATGTTAA 20282 Query 97166 AAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGA-AAGCTTTCC- 97223 | || || || ||||| | |||| |||||||||||| | |||| || || |||| | Sbjct 20283 ATGGTACACCAAGTCCAACATCACATGATCTTTGATAAAGAAGACACGATAATCTTTTCG 20342 Query 97224 -ATCACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTT 97274 || | ||||| || || | || | |||||| || || || |||||||| Sbjct 20343 TATTTGATACATAGAATTGGCAAAACATATGACATGGTGGTAATGCCATTTT 20394 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 || || || |||||||| ||||||||||||||||||||||| || | || ||||||| | Sbjct 20596 TACTCAGCACCAAAATGTCTCCATTGGAATCCATAAACAGGACCCAAATCACCTTCTTTT 20655 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGC 97521 |||| | | |||| ||||| ||||| | ||| ||||| | |||||||| || Sbjct 20656 CTATGTGATAGCCCAATTTTATCCAAATATTCACGAGAACCATTACCGTCCCAAATATGA 20715 Query 97522 ACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCT 97581 | ||| | | | | | |||||| | ||| ||| | |||||||| || |||||| Sbjct 20716 ATACCTTTTTCGGTTAAATGTTTGCTATTTGTATTACCTTTAATAAACCATAATAATTCT 20775 Query 97582 TCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAA 97629 || | || | | | | ||| || | |||||||||||| | ||| ||| Sbjct 20776 TCTATAATAGCACGCGTAAAAACGCGCTTAGTTGTTAATAAAGGTAAA 20823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346722818199320