Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2123 125 6e-24 seq1318 122 8e-23 seq352 109 5e-19 seq147 91.5 1e-13 >seq2123 Length=30488 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || ||||||||||| ||||| ||| | || || |||||| || ||||| ||| Sbjct 15053 GTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTGTTTACCA 15112 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | |||||||| ||||| || || || || |||||||| ||| |||||| ||| Sbjct 15113 GCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGAATTTTGGTTTTT 15172 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || || |||| ||| |||| | ||| || || | ||| | ||||||||||| || || Sbjct 15173 ACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGGTGAGTGTC 15232 Query 118722 TTTACAAAAATCTGCAT 118738 ||||| || || ||||| Sbjct 15233 TTTACGAAGATTTGCAT 15249 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 |||||| || | ||| |||||||||||||| ||||| || | || || |||||| Sbjct 14812 CACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTC 14871 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || ||||| || ||| | |||||||| |||||||| || || || || || |||||| Sbjct 14872 AAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTG 14931 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| ||| ||| || || |||| ||| || | ||| || || | || | ||||| Sbjct 14932 AATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTT 14991 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||||||| |||||||| ||||| Sbjct 14992 TCCAGTTAGAGTTTTAACAAAAATTTGCAT 15021 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || |||||||| ||||| ||||| | ||| || ||| || | || || ||| Sbjct 14597 GTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCA 14656 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || | ||| |||||||| ||||| || ||||| || ||| |||||| |||| Sbjct 14657 GCGAAAATCAAACGTTGCTGATCTGGAGGGATCCCCTCTTTATCTTGAATTTTGGTTTTA 14716 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 ||||| || | ||| || | || | |||||||| | ||| | ||| || || || || || Sbjct 14717 ACCTGATCAATGGTATCAGATGAT-TCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGT 14775 Query 118721 TTTTACAAAAATCTGCAT 118738 |||||||||||| ||||| Sbjct 14776 TTTTACAAAAATTTGCAT 14793 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | || | || | || | || ||||||||||||||||| ||||| Sbjct 15249 TACCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTG 15308 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || || || || ||||| |||||| | || ||||| ||||| || || | Sbjct 15309 AAAGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGG 15368 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || |||||| ||||||| |||||| || || | ||||| | || | Sbjct 15369 GAATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAA 15428 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || | ||| | || || ||||| || ||||| || || || |||||| Sbjct 15429 CTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATG 15478 >seq1318 Length=24839 Score = 122 bits (134), Expect = 8e-23 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || |||||||| | | |||||||| | ||| || ||||||||||| ||||||||| Sbjct 4078 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCG--G 4021 Query 118572 ATAGTGCGCGT--ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | |||| ||| ||| || | |||||| ||||| | || | ||| || ||||| || | Sbjct 4020 AAAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGG 3961 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || || ||| |||||||| ||| || | |||| ||| || | || || | Sbjct 3960 GGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAA 3901 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | || | || | ||||| || || || ||||| |||||||| |||||| Sbjct 3900 CTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATG 3851 >seq352 Length=65406 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| ||||| ||||||||||| || ||||| | ||| || ||| || | ||| Sbjct 28754 TGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTGT 28813 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| | || |||||||| ||||| || || ||||| ||| ||| ||| Sbjct 28814 TTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTT 28873 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 |||||| || || | ||| || | | ||| || || | ||| | ||||| ||||| Sbjct 28874 GCTTTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTG 28933 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| ||||| Sbjct 28934 AGGGTCTTGACGAAAATTTGCAT 28956 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || ||||||||||| || ||||| || ||| ||| ||| || | ||| Sbjct 29666 TGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCTTCCAATTGT 29725 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| | || || ||||| ||||| || || ||||| ||| ||| ||| Sbjct 29726 TTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTT 29785 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 |||||| || || | || || || |||||| || | ||| | ||||| || || Sbjct 29786 GCTTTAACTTGATCAATAGTATCATTGGACTCGACTTCAAGGGTAATGGTTTTCCCAGTA 29845 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || ||||| Sbjct 29846 AGGGTCTTGACGAATATTTGCAT 29868 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || |||||||||||||| || || || || || ||| || | ||| Sbjct 29438 TGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCTTCTAATTGT 29497 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| | || || ||||| || || || || || || ||| ||| ||| Sbjct 29498 TTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCTTGAATCTTT 29557 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 |||||| || || | ||| || | | ||| || || | || | ||||| |||||| Sbjct 29558 GCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGTTTTACCGGTC 29617 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || ||||| ||||| Sbjct 29618 AGCGTTTTAACGAAAATTTGCAT 29640 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || ||||||||||| || ||||| || || || ||| || | ||| Sbjct 29210 TGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCTTCTAATTGT 29269 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| |||| | || || ||||| ||||| || || || || ||| ||| || Sbjct 29270 TTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCTTGAATCTTC 29329 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 ||| || || || | ||| || | | |||||| || | || | ||||| ||||| Sbjct 29330 GTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTG 29389 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| ||||| Sbjct 29390 AGGGTCTTGACGAAAATTTGCAT 29412 >seq147 Length=125324 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118539 ATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTT 118598 ||||| |||||| || || || ||||| |||| || ||| ||| || | || || Sbjct 74549 ATTGTGCTCTCTTTCTGGATATTATAATCACTCAAGGTACGCTCATCTTCTAATTGACTT 74608 Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 ||||| | || | ||| || ||| || || || || ||||||||| || || | Sbjct 74609 CCAGCAAAAATAAAACGTTGACTATCAGGGGGAATTCCTTCCTTGTCTTGGATCTTGCAT 74668 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 ||||| | || ||| || | ||| ||||| | ||| |||||||| ||||| || Sbjct 74669 TTAACTAGGCTGATGGTATCAGACGACTCTACCTCCAAGGTTACCGTTTTTCCGGTTAGT 74728 Query 118719 GTTTTTACAAAAATCTGCATGGC 118741 ||||||||||| | ||||||||| Sbjct 74729 GTTTTTACAAATACCTGCATGGC 74751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433753860929392