Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1318 123 4e-23 seq352 107 3e-18 seq642 100 4e-16 seq2123 96.9 5e-15 seq9491 95.1 2e-14 seq1345 93.3 6e-14 seq1506 91.5 2e-13 seq1364 89.7 8e-13 >seq1318 Length=24839 Score = 123 bits (136), Expect = 4e-23 Identities = 171/245 (70%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||| ||||| || |||||||| ||||| ||||| ||||| | | | ||| || Sbjct 4061 TACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTC 4002 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| ||||| |||||||| || || | ||| |||||||| || ||||||||||||||||| Sbjct 4001 TAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTG 3942 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 ||||| |||||| ||||||| || || ||||| Sbjct 3941 AATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTT 3882 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCATTTTATTAGAAAAATAT-TTGTTaaaaaaaa 146306 ||| || | |||||||| || |||||||| | ||| |||||| | ||| ||||||| Sbjct 3881 ACCAGTAAGTGTTTTAACAAAAATTTGCATGT--TTAAAAAAATTTATTGGGGAAAAAAA 3824 Query 146307 TAATT 146311 | ||| Sbjct 3823 TTATT 3819 >seq352 Length=65406 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | ||| | ||| | |||||||||||| ||||||||||| || Sbjct 28730 CCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGAT 28789 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || |||||||| ||||| || ||||| | ||||||||| |||||| Sbjct 28790 AAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGA 28849 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 28850 ATACCTTCCTTATCTTG 28866 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||| | ||| | ||| |||||||| |||||||||||||| Sbjct 29186 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 29245 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| ||||||||||| ||||| || ||||| | ||| ||||| ||||| Sbjct 29246 AACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGG 29305 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 29306 ATACCTTCTTTATCTTG 29322 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||| | ||| | ||| |||||||| |||||||||||||| Sbjct 29642 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 29701 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | | ||| || |||||||| ||||| || || || | ||| ||||| |||||| Sbjct 29702 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 29761 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 29762 ATTCCTTCCTTATCTTG 29778 Score = 102 bits (112), Expect = 1e-16 Identities = 154/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | | | ||| | ||| | ||| |||||||| || ||||| ||||| Sbjct 29414 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 29473 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | | ||| ||||||||||| ||||| || ||||| | ||| ||||| || || Sbjct 29474 AATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGG 29533 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||||||||| ||||| || |||||| Sbjct 29534 ATACCTTCTTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACT 29593 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || |||||||||||||| || | ||||||| ||| |||||||| Sbjct 29594 TCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 29640 >seq642 Length=35260 Score = 100 bits (110), Expect = 4e-16 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTT-TAGATATATTATAATCTGA 146109 ||||| | ||||| | ||| | ||| || ||||| |||| | || |||||||||||||| Sbjct 6664 CCACCACGTAGTCTAAGTACAAGATGCAACGTAGACTCTTCTTGA-ATATTATAATCTGA 6606 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | |||| | | ||| || ||||| || ||||||||||| | | |||||| || ||||| Sbjct 6605 TAAAGTTTTTCCATCCTCCAATTGCTTACCAGCAAAAATAATACGTTGCTGGTCAGGAGG 6546 Query 146170 AATTCCTTCTTT 146181 ||| |||||||| Sbjct 6545 AATGCCTTCTTT 6534 >seq2123 Length=30488 Score = 96.9 bits (106), Expect = 5e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 146080 AGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCC 146139 ||| |||||||| || |||||||| |||||||| | | ||| || ||||| || || Sbjct 14596 AGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACC 14655 Query 146140 AGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| |||||||| | ||||||||| ||||| || || ||||||||||| Sbjct 14656 AGCGAAAATCAAACGTTGCTGATCTGGAGGGATCCCCTCTTTATCTTG 14703 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| | ||| | ||| | ||| || ||||| || |||||||||||| Sbjct 15251 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 15310 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | || || | |||||| ||||| ||||| | | |||||| || || ||| Sbjct 15311 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 15370 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||| ||||| ||| || ||| ||| ||| Sbjct 15371 ATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACT 15430 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || |||||||| || || || | ||||||| ||| |||||||| Sbjct 15431 TCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 15477 >seq9491 Length=922 Score = 95.1 bits (104), Expect = 2e-14 Identities = 153/226 (68%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| ||||||| ||||||| ||||| || || | ||| ||| || ||||| || Sbjct 540 CCACCAGTAAGTCTCAATACCAGATGTATTGTGGAATGTTTTTTTATCTTGTAATCCGAT 481 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | || | || ||| || | | | |||||||||| |||||||| ||||| ||||| Sbjct 480 AACGTACGGCCATCTTCAAGTAACATACCAGCAAAAACTAATCTTTGTTGATCTGGAGGT 421 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTAT--CTGAACTTTCTA 146228 || ||||||||||| || |||| || || || || Sbjct 420 ATCCCTTCTTTATCCTGAATTTTTTCTTTTAGGTTATAAATTGTATCACTAAAATT--TA 363 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTG 146274 ||||||||| || |||||||| |||||||| |||| ||||||||| Sbjct 362 ATTCTAGTGTTATAGTTTTACCAGTTAATGTATTAACGAATATTTG 317 >seq1345 Length=25233 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| || | ||||||||| ||||||| || || || | ||||||| ||||| Sbjct 19644 CCACCCCTTAATCTTAATACTAAATGTAGCGTGGACTCAACACATATATTGTAATCACTT 19585 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || ||| || | ||| || ||||||||||| |||||||| ||||| || || Sbjct 19584 AAAGTACGGCCATCTTCAAGTTGCTTACCAGCAAAAATTAATCTTTGTTGATCTGGTGGT 19525 Query 146171 ATTCCTTCTTTATC 146184 || |||||||| || Sbjct 19524 ATACCTTCTTTTTC 19511 >seq1506 Length=18313 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/132 (76%), Gaps = 6/132 (5%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||||||||| ||||||| ||||||||| | ||||||||||||| Sbjct 10733 CCACCTCTTAATCTTAATACTAAATGTACAGTAGATTCATGTTGTATATTATAATCTTCT 10792 Query 146111 AGAGTTCTGCTATCATCT---AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | || ||| ||||||| | |||||| || || | || ||| | ||| ||||| ||| Sbjct 10793 AAAG---TGCGATCATCTTCAAGTTGTTTACCGGCCATAAGCAAACGTTGTTGATCTGGA 10849 Query 146168 GGAATTCCTTCT 146179 || || |||||| Sbjct 10850 GGTATACCTTCT 10861 >seq1364 Length=43964 Score = 89.7 bits (98), Expect = 8e-13 Identities = 124/182 (68%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||| |||||||| | || | | ||| || |||||||| || ||||| ||||| | | Sbjct 15880 ATATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGT 15821 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 ||||||||||| ||||| |||||||| ||||| ||| Sbjct 15820 TGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTA 15761 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 ||||| |||||||| || || || |||||||| || | || |||| ||| |||||| Sbjct 15760 TCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGC 15701 Query 146276 AT 146277 || Sbjct 15700 AT 15699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743391858897920