Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3144 273 2e-68 >seq3144 Length=5517 Score = 273 bits (302), Expect = 2e-68 Identities = 327/441 (74%), Gaps = 6/441 (1%) Strand=Plus/Minus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 ||||||||| || || | |||||||||||||||||||| |||| ||| ||| Sbjct 5017 TTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTGTAAACTAATTAA 4958 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAA 16062 |||||||||||||||||||| | |||| ||| |||| | | || | | ||| || Sbjct 4957 ATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCACCAAGTGCCACTAA 4898 Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122 ||||||||| || |||||||| ||||| | ||||||||||| |||||| || ||||| Sbjct 4897 TAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCGTTCATACCAATTAA 4838 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182 ||||| || | ||||||||||||||| | || |||||| |||||||||| || || Sbjct 4837 ATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCGCTTCCGCTATAAT 4778 Query 16183 ATCTCTTACTACACTATTTAACGGAGG--GTTTAATAAG-TGTTTAAACATTATACAAGC 16239 | | | ||||| | ||| ||||| || | ||| || | || | | ||| || Sbjct 4777 AGC---TTCTACAGTTTTTGTTGGAGGTCGTGCACGAAGATGAGTGAATAAGAGACATGC 4721 Query 16240 AAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGG 16299 ||||||||||||||||||||| || | | |||| ||||| ||||| || | ||||| Sbjct 4720 AAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAAAAGTTAATCCTGG 4661 Query 16300 CATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACC 16359 ||| | ||||| ||| || | |||||| || | || || | |||||||||||||| || Sbjct 4660 CATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAGAAAAGAATATTCC 4601 Query 16360 TTCAACTGCGGCAAATGCAAC 16380 |||||| |||||||| || || Sbjct 4600 TTCAACAGCGGCAAACGCTAC 4580 Score = 134 bits (148), Expect = 1e-26 Identities = 191/264 (72%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 16529 TACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCG 16588 |||||||||||||| ||||| || || |||||||| |||||||| ||||| ||||| Sbjct 4352 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 4293 Query 16589 GATATTTGTACTTCA-GAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCT 16647 | ||||| |||||| | ||||| | ||| |||| ||||| || || || ||||| Sbjct 4292 GGAATTTGGACTTCATTACTAAAA-CGTTCCACTAAATTTTCATTGACAATACCATCCGA 4234 Query 16648 AGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTT-TA 16706 || ||||| || || | | ||| |||||| |||||| | ||| |||||| || Sbjct 4233 GGCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCATCGTTAAGTTTATA 4174 Query 16707 --ACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAAC 16764 ||| ||| | ||| || || | || || || || ||||||||||| ||||| | Sbjct 4173 CTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTC 4114 Query 16765 AGCCTTTTTATACATTTTCCATAT 16788 |||||||| ||||||| ||| || Sbjct 4113 GGCCTTTTTGTACATTTGCCAGAT 4090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462428308453600