Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1318 111 1e-19 seq352 111 1e-19 seq2123 98.7 8e-16 >seq1318 Length=24839 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || |||| | |||||||| ||| | |||||||||||||||||| ||||| |||| Sbjct 4078 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 4019 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | |||||| || ||||| || ||| | || | | |||||||||| ||| Sbjct 4018 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 3959 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||||| ||||| ||||| || ||||| | | | || || | || | Sbjct 3958 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 3899 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAA 18332 || | || ||| |||| || || | |||||| |||||||||||||| |||||| Sbjct 3898 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTTAAA 3845 >seq352 Length=65406 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | || || || ||||||||||||||||| ||||| | || ||| || |||| Sbjct 29429 AGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCT 29488 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || |||||||| || || |||| | | ||||||||| ||| | ||||| ||||| Sbjct 29489 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCT 29548 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | |||| || || || | | || ||| || ||| ||||| ||||| | Sbjct 29549 TGAATCT-TTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGT 29607 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| ||||||| ||||| || ||||||||||| Sbjct 29608 TTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 29640 Score = 102 bits (112), Expect = 6e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | || || ||||||||||||||||| || || || | || || | |||| Sbjct 29657 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCT 29716 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||||||||| || || |||| | | ||||||||| || | ||||||||||| Sbjct 29717 TCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCT 29776 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | |||| || || || ||| ||| ||| || |||| ||||| ||| ||| | Sbjct 29777 TGAATCT-TTGCTTTAACTTGATCAATAGTATCATTGGACTCGACTTCAAGGGTAATGGT 29835 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| || || | || || || || |||||||| Sbjct 29836 TTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 29868 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 |||||| | || || |||||||| |||||||| || ||||| | | || | ||| Sbjct 28972 AAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATC 29031 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 |||||||||||| || || |||| | | ||||||||| ||| | ||||||||||| Sbjct 29032 TTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATC 29091 Query 18233 GGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 ||| | |||| || || || | | || ||| || |||| ||||| || || Sbjct 29092 TTGAATCT-TTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTG 29150 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||| | || || || ||||||||||| Sbjct 29151 TTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 29184 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || ||||| || | |||||| | || || || |||||||||||||| || || || | Sbjct 28730 CCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGAT 28789 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||||||||||||| || || |||| | | ||| ||||| || Sbjct 28790 AAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGA 28849 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||| | |||| || || || | | || ||| || ||| Sbjct 28850 ATACCTTCCTTATCTTGAATCT-TTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAAC 28908 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||| || |||| ||||| | || || || ||||||||||| Sbjct 28909 TTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 28956 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||| | || || ||||||||||||||||| || || || | || || || |||| Sbjct 29201 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCT 29260 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || |||||||| || || |||| | | ||||||||| || | ||||| ||||| Sbjct 29261 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCT 29320 Query 18234 GCAAT-----TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGA 18288 ||| || || ||||| || || || ||| || |||| ||||| || | Sbjct 29321 TGAATCTTCGTTTTTACTTGATCTATG-----GTATCAGAGGACTCGACTTCAAGAGTAA 29375 Query 18289 TGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | |||| ||||| | || || || ||||||||||| Sbjct 29376 TTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 29412 >seq2123 Length=30488 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || |||| |||||| | ||||| ||||| |||||||||||||| || || | Sbjct 15251 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 15310 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||||| | ||||||||| || | ||||| | ||| || || ||| Sbjct 15311 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 15370 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||||| |||| || || || ||| |||||| | || Sbjct 15371 ATTCCTTCTTTGTCTTGAATTT-TTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAAC 15429 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||||| | || ||||| | ||||| || || |||||||| Sbjct 15430 TTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 15477 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || |||||||||||||| |||||||||| | ||| | ||| || | |||| Sbjct 15047 TGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTGT 15106 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTT-- 18240 || || || | || || | ||| || || ||| | || |||||||| ||||| Sbjct 15107 TTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGAATTTTG 15166 Query 18241 GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 ||| || || || | | || || || ||| || | ||||||| ||||||||| Sbjct 15167 GTT--TTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGG 15224 Query 18301 TCAATGTTTTTACAAAAATTTGCAT 18325 | | ||| ||||| || |||||||| Sbjct 15225 TGAGTGTCTTTACGAAGATTTGCAT 15249 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| |||||||||||||| ||||| || || | | || || |||| Sbjct 14582 AGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCT 14641 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||||||| || || || | || | | ||| ||||| || | || || ||||| Sbjct 14642 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATCCCCTCTTTATCT 14701 Query 18234 GCAATTT--GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 ||||| ||| || ||||| ||| || ||| | ||| |||| ||| || Sbjct 14702 TGAATTTTGGTT--TTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCG 14759 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || || || | ||||||||||||||||||||| Sbjct 14760 TCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 14793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379277073760620