Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1330 347 2e-90 seq3144 190 3e-43 seq453 114 2e-20 >seq1330 Length=20794 Score = 347 bits (384), Expect = 2e-90 Identities = 671/984 (68%), Gaps = 6/984 (1%) Strand=Plus/Plus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGA-CACATCAACG 63246 ||| || || || |||||||||| || | |||| |||| ||||| || || ||| Sbjct 17082 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 17141 Query 63247 ACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63305 | | | || | | |||| | | ||||||||| ||||| | || |||||| || | Sbjct 17142 CCAATTATCATT--TGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAA 17199 Query 63306 AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63365 |||| ||| | || | | ||| || ||||| ||||| ||||| | ||| | || | Sbjct 17200 AATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCA 17259 Query 63366 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63425 | ||| |||| |||||||| ||| || || || || | | || || |||||||||||| Sbjct 17260 AAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCT 17319 Query 63426 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63485 || ||||| | |||||||| || ||||||||||| | ||||| |||||||| || ||| Sbjct 17320 CCTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCATTT 17379 Query 63486 GATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGA 63545 || |||||| || || | ||||| ||| | |||||||| ||| ||| | | Sbjct 17380 GAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACA 17439 Query 63546 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCT 63605 || || || ||||| | ||||| || | ||||||| ||| || || |||||||| || Sbjct 17440 CCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCC 17499 Query 63606 TCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGT 63664 ||||| |||||| |||| ||||| |||||||| || || | ||| | | || || Sbjct 17500 TCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGT 17558 Query 63665 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63724 || |||||||| || || ||||| ||||| ||||| | ||||| || | |||||||| Sbjct 17559 GCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTA 17618 Query 63725 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63784 || |||||||| | || ||||| | ||||| || || || || ||||| | ||| Sbjct 17619 AGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCAT 17678 Query 63785 GTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63844 || || || | || ||| ||| |||| || | || ||| |||| | ||| Sbjct 17679 ATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGT 17738 Query 63845 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTT 63904 |||||| |||||||| || ||| | | |||| || ||||| || ||||| || || Sbjct 17739 TTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAGTTT 17798 Query 63905 ATCCTTATATTTGTTAACTATATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCC 63964 ||| || || | || |||| || | ||||| || | | ||||||| Sbjct 17799 TTCCGAATTGTTCATCACAATATTATAAGTTTTTTCAGAAATCATTGACGCGCGTTTCCC 17858 Query 63965 ATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGT 64024 |||| ||||| | ||| || | | ||| || | || | ||| | |||||| || Sbjct 17859 TGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTTTAGT 17918 Query 64025 TTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTG 64084 ||| || || ||||| || | || || | || || || | |||||| |||||||||| Sbjct 17919 TTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGATGTTT 17978 Query 64085 TGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 64144 || || | || || |||| || |||| | | || ||||| || || | || || Sbjct 17979 AGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAACACC 18038 Query 64145 ATTATATATTCCTTGAATAACCTT 64168 | ||| | |||| ||| ||||| Sbjct 18039 TTGATAAACTCCTGAAATGACCTT 18062 Score = 109 bits (120), Expect = 7e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 62928 ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCA 62987 ||||||||| |||||| | | |||| ||||| || || || |||| | || | Sbjct 16751 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 16810 Query 62988 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 63047 |||| | ||||| || || | ||||||||| ||||| || || | ||||||||||||| Sbjct 16811 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 16870 Query 63048 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63107 || ||||| | ||| || || || || |||| ||||| ||||| ||||| ||| Sbjct 16871 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 16930 Query 63108 TCTATAATCGCTTTCCAGAC 63127 || | ||| ||| ||||||| Sbjct 16931 TCAAGAATTGCTGTCCAGAC 16950 Score = 104 bits (114), Expect = 3e-17 Identities = 234/353 (66%), Gaps = 12/353 (3%) Strand=Plus/Plus Query 62379 GGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATAC 62438 |||||||| | ||| ||||| |||| | || | || |||||| || || ||||| Sbjct 16054 GGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAA 16113 Query 62439 GGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCC 62498 ||||| | | |||||| ||||| ||||| | ||| |||||||| ||||| ||||| Sbjct 16114 GGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCG 16173 Query 62499 ACCAATAAACTATTTCTAAGACCGTATGTTCTGAT--TTTATCTTTTAGATGTTCCCAAT 62556 | |||||| ||||| | ||| |||||||||| ||| | ||| | | ||||| Sbjct 16174 AGCAATAATGAATTTCGTACACC--ATGTTCTGATATTTTTTGTTTCAACAAATTCCAAT 16231 Query 62557 TCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTT----ACTG 62612 ||| | ||| | || ||||| ||||||| ||| || || || | Sbjct 16232 CCCATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACCG 16291 Query 62613 GCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCC 62672 | | ||||| ||| | ||||| || || || | | ||||| ||| || Sbjct 16292 GTG----ATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCT 16347 Query 62673 TCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGC 62725 ||||||||||| | ||| || || ||||| || | |||||| || || | ||| Sbjct 16348 TCTAATGCACCATGATACATTGTCTCAAATATTTGCTTATTCAGTTCCTTTGC 16400 >seq3144 Length=5517 Score = 190 bits (210), Expect = 3e-43 Identities = 231/310 (75%), Gaps = 6/310 (2%) Strand=Plus/Minus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 || || | ||||| ||| ||||| || |||||||| ||||| || ||||| || Sbjct 4382 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 4323 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCT 33962 ||||||||||| || |||||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 4322 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 4263 Query 33963 GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 34022 ||||||||||||| || || ||||| ||| ||||| || ||||| || || ||| Sbjct 4262 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 4203 Query 34023 AAATATTTTTCGTC-TGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATATATC 34078 || ||||||| || | || | |||||| | ||||||||| ||||| || || | || Sbjct 4202 AAGAATTTTTCTTCATCGT-TAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 4144 Query 34079 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGT-CAT 34137 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| | || Sbjct 4143 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGATCTACAC 4084 Query 34138 GATATTGGAT 34147 ||||| ||| Sbjct 4083 AATATTTGAT 4074 Score = 159 bits (176), Expect = 4e-34 Identities = 316/458 (69%), Gaps = 10/458 (2%) Strand=Plus/Minus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||||||||| |||||| || || || |||||||| || ||||| ||||| |||| Sbjct 5029 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 4970 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTA-AAtttttttAAATC 33396 || || ||||| |||||||| ||||| ||| || |||||| | | Sbjct 4969 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-- 4912 Query 33397 CCAATT--CAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCAT-TTCAC 33453 |||| | || ||| |||||||| || || ||||| |||||| ||||||| | ||| | Sbjct 4911 CCAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC 4853 Query 33454 AATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATA 33513 ||||| || || | |||||||| | || | || | |||||||||||| || | | Sbjct 4852 G-TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAA 4794 Query 33514 CCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAA-ATGTTTA 33572 |||| | | ||||||| | || |||| | ||| | || | || ||| | Sbjct 4793 CCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTG 4735 Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 || | | |||||| ||||| || |||| || || |||| | ||||| |||||| ||| Sbjct 4734 AATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAA 4675 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || | ||| ||||| | || | || || | |||||| || || ||||| | ||| Sbjct 4674 AAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCA 4615 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33730 |||||||| |||||||| || || ||||| || | ||| Sbjct 4614 GAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 4577 >seq453 Length=43245 Score = 114 bits (126), Expect = 2e-20 Identities = 141/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 63612 CTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCA 63671 |||||||| |||| | | || ||| ||||| |||||||| | | | || || ||| Sbjct 30221 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 30162 Query 63672 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63731 ||||| || || ||| || || ||||| |||| || || | || ||| || || ||| Sbjct 30161 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 30102 Query 63732 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63791 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 30101 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 30042 Query 63792 GGTCTTTCAACAA 63804 ||||||||||||| Sbjct 30041 GGTCTTTCAACAA 30029 Score = 82.4 bits (90), Expect = 1e-10 Identities = 191/286 (67%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 62796 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 62855 |||||||||||||| ||| ||||||||||||||| ||||||||||| ||| || Sbjct 31339 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 31280 Query 62856 ATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 62914 | |||||| | ||| | | || ||||| | | || | || || | |||||||| Sbjct 31279 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 31220 Query 62915 ----TCGCCCATCTATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCT 62969 ||| |||| ||||| | |||| || || || | |||||| |||||| Sbjct 31219 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 31160 Query 62970 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTT 63029 || |||| | | | ||||| | || ||||| || | |||| || | ||||| Sbjct 31159 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 31100 Query 63030 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 63075 || | ||| | ||||||| |||| || || | ||| |||||| Sbjct 31099 CCAAGATTCTTTTGATTAGATTTTTCATTGCAAGAATC--TATAAA 31056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629703634505280