Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1330 224 9e-54 seq3144 176 4e-39 seq453 100 3e-16 >seq1330 Length=20794 Score = 224 bits (248), Expect = 9e-54 Identities = 469/695 (67%), Gaps = 4/695 (1%) Strand=Plus/Plus Query 37941 AAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCA 38000 ||| |||| ||||| ||||| ||| || ||| ||| ||| | || | ||| Sbjct 17085 AAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACTCCA 17144 Query 38001 TTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAA 38060 | |||| | ||| || | || |||||| | ||| | ||||| | |||| |||||| Sbjct 17145 ATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAAAATAA 17204 Query 38061 ATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATAT 38120 ||| | | | |||||| || || ||| ||| |||| | |||||| || || Sbjct 17205 ATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCAAAAAT 17264 Query 38121 ATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTG 38180 |||| ||||| | ||||| |||||| | | || || || | ||| | ||||| || Sbjct 17265 GTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCTCCTTG 17324 Query 38181 ATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTT 38240 || || ||||||| | || |||||||| | | |||||| || | || ||||| || | Sbjct 17325 ATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCATTTGAATA 17384 Query 38241 GCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTAT 38300 || ||| | || | ||||||| || | || || || ||| || || || || Sbjct 17385 ACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACACCAAT 17444 Query 38301 TCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTAT 38360 ||||||||| || || || | |||||| ||| || |||||| | || || ||||| Sbjct 17445 ACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCCTCTAT 17504 Query 38361 ACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGC 38420 ||||| || || | || | ||||||||| || | |||||| || || || || Sbjct 17505 TGAATCATCTTTCATAGTTAAAAGAAAACAACTCGAAAGTTGAGGTCTAGGTGTGCCAGC 17564 Query 38421 GTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTC 38480 ||||| || || |||||||| || | || | ||||| |||| ||| || ||||| Sbjct 17565 ATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTAAGTTTC 17624 Query 38481 TATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTG 38540 || || | || |||||| | |||||||| || | | ||| | ||| ||||||||||| Sbjct 17625 AATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCATATGTTG 17684 Query 38541 TGGTCTTTCTATTATTTTATTATTCTGTT--TAAGTAGATACGATTTTTCTAATGTTTTT 38598 || | || | ||| | || || ||| ||||| ||| |||| | ||||| Sbjct 17685 GGGACGCTCGGCAACTTT-TCCACCTATTCGTAA-AAGATAAGATCTTTCAAGAGTTTTA 17742 Query 38599 ATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 | |||||||||| ||||| |||||||||||| || Sbjct 17743 AATCCAAAATAATTATATTTATAATCTCTATCATA 17777 Score = 123 bits (136), Expect = 2e-23 Identities = 233/338 (69%), Gaps = 6/338 (2%) Strand=Plus/Plus Query 37129 GGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATAT 37188 || || |||| ||||| || |||| | || | || | || || ||||| ||||| Sbjct 16054 GGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAA 16113 Query 37189 GGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCT 37248 ||||||| | |||||| | |||||||| || ||||||||||||||||||||||| Sbjct 16114 GGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCG 16173 Query 37249 ATTAGAAGGCTATTTCTCAATCCATGTGTATTA-ATTCTCTTTTTTAGTTCATTCCAATC 37307 | | | ||||| | |||||| | | | ||| | | ||| | ||||||||| Sbjct 16174 AGCAATAATGAATTTCGTACACCATGT-TCTGATATTTTTTGTTTCAACAAATTCCAATC 16232 Query 37308 CCATAAATCTGTTGGGT--TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCT 37365 ||||||||| || || | | || ||||||||| ||||||| ||| ||||| | Sbjct 16233 CCATAAATCAGTAGGCTCAACATT--CCACATATCGTATTGTAAAATGCCTTTGGAAACC 16290 Query 37366 GGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCT 37425 || || | | ||| | |||||| || ||| | ||| | |||||| || | |||| Sbjct 16291 GGTGATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCT 16350 Query 37426 AGTGCGGCATAATATATTGTTTCGAAAATTTGTATATT 37463 | ||| ||| ||| ||||| || || ||||| |||| Sbjct 16351 AATGCACCATGATACATTGTCTCAAATATTTGCTTATT 16388 Score = 98.7 bits (108), Expect = 9e-16 Identities = 136/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 37708 TTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTC 37767 |||||||||||||||||||| | | | ||| | |||||||||||| | |||||| Sbjct 16781 TTACATACAGCAACTTCATCCGGGCTCGAATATTCAACAATCTCTGTACACAAATTACTA 16840 Query 37768 GATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGT 37827 || | ||||| || | ||| |||||| ||||| ||||||||||||||| || || Sbjct 16841 CATTTGATTGTACCAAGATTTTGTTGATTAGATTTACGATTACAAGAATCTTTGTAGAGC 16900 Query 37828 ATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGC 37886 ||||| || || || ||| || || | || | ||| | | |||| | |||| || Sbjct 16901 ATATATGGTGTACCCGTTTCGATCTGGGATTCAAGAATTGCTGTCCA-GACTTTCTGAGC 16959 Query 37887 TTTAACGA 37894 |||||||| Sbjct 16960 TTTAACGA 16967 >seq3144 Length=5517 Score = 176 bits (194), Expect = 4e-39 Identities = 307/441 (70%), Gaps = 8/441 (2%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 |||||||| || || ||| ||| || ||||| || ||||||| || || | Sbjct 5016 TTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTGTAAACTAATTAAA 4957 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 |||||||| ||||||||| | | ||| | | |||| | | ||| | | |||| Sbjct 4956 TCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCACCAAGTGCCACTAAT 4897 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 |||||||| || || ||||| ||||| | ||||||| |||||||| || | | Sbjct 4896 AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCGTTCATACCAATTAAA 4837 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578 | || || | || |||| ||||| || | |||||| ||||||| || || || Sbjct 4836 TTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCGCTTCCGCTATAATA 4777 Query 11579 GACGTTATA-ACTTCCTTAGATGGTGGATGT--AATAA-ATGTTTAAACATTAAACACGC 11634 | || || | || || | ||| || || | || ||| | || | | ||| || Sbjct 4776 GC--TTCTACAGTT--TTTGTTGGAGGTCGTGCACGAAGATGAGTGAATAAGAGACATGC 4721 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 |||||||||||| || ||||| |||| | |||||||| || ||||| |||||||| || Sbjct 4720 AAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAAAAGTTAATCCTGG 4661 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||||| ||||| ||| |||| |||||| || | || || | ||||||||||||||||| Sbjct 4660 CATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAGAAAAGAATATTCC 4601 Query 11755 CTCCACAGCTGCAAATGCTAC 11775 || ||||| ||||| ||||| Sbjct 4600 TTCAACAGCGGCAAACGCTAC 4580 Score = 129 bits (142), Expect = 5e-25 Identities = 189/264 (72%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 11921 TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCT 11980 |||||||||||||| |||||||| || || ||||||||||| ||||||| ||| ||| Sbjct 4352 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 4293 Query 11981 GAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTA 12040 | | || || || | ||| | |||| ||||||| ||||| ||||||||||| Sbjct 4292 GGAATTTGGACTTCATTACTAAAACGTTCCACTAAATTTTCATTGACAATACCATCCGAG 4233 Query 12041 GATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAA-TTTA-- 12097 | ||||| || || | | || |||||| ||||||| || | ||||| |||| Sbjct 4232 GCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTC-ATCGTTAAGTTTATA 4174 Query 12098 -TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCAC 12156 |||||||||| | ||| || || | || ||||| ||||| |||||||| || | Sbjct 4173 CTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTC 4114 Query 12157 TGATTGTTTATACATTTTCCAGAT 12180 | | ||| ||||||| |||||| Sbjct 4113 GGCCTTTTTGTACATTTGCCAGAT 4090 >seq453 Length=43245 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 38362 CTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCG 38421 || ||||| || ||| | | || ||| || || |||||||| || ||| || || || Sbjct 30221 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 30162 Query 38422 TTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCT 38481 ||||| || || ||| |||||| | || |||| || |||| ||||||| ||||| Sbjct 30161 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 30102 Query 38482 ATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGT 38541 || | |||| |||||| || ||||| || | ||| || | ||| | ||| |||||| Sbjct 30101 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 30042 Query 38542 GGTCTTTC 38549 |||||||| Sbjct 30041 GGTCTTTC 30034 Score = 93.3 bits (102), Expect = 4e-14 Identities = 217/326 (67%), Gaps = 6/326 (2%) Strand=Plus/Minus Query 37135 ACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCA 37194 || || ||||| || ||| |||||| | |||| ||| |||||||| || ||||||||| Sbjct 31915 ACTACTTGAAATTCCCCACTTAATACACGTCTTTGATAAATATTGCTTGTGTATGGTTCA 31856 Query 37195 ATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGA 37254 | | | ||||| || | | || ||| ||||||||||| ||||| ||||| || | Sbjct 31855 AAGCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATCAAC 31796 Query 37255 AGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAA 37314 | ||||| | ||||| | | | || | | ||| | || ||| |||||| | Sbjct 31795 AAAGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCATCGA 31736 Query 37315 TCTGTTGG--GTTCT----TTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGA 37368 |||| || || || || ||||| || || || || ||||||||||| || Sbjct 31735 TCTGAAGGTTGTACTCCTGTTCCCCACAATTCGTAATGAAGGATACCTTTACTAATCGGG 31676 Query 37369 GAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGT 37428 ||| | | |||||| ||||| || | | ||| | ||| || ||||| || Sbjct 31675 GAACCCTCATATGTAGGGTAAGGACCATCTTTAGCAGCAATTTCACATGATGATTCAAGA 31616 Query 37429 GCGGCATAATATATTGTTTCGAAAAT 37454 | |||| ||||| ||||| ||||| Sbjct 31615 GATGCATGATATAAAGTTTCAAAAAT 31590 Score = 89.7 bits (98), Expect = 5e-13 Identities = 196/290 (68%), Gaps = 8/290 (3%) Strand=Plus/Minus Query 37546 GGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATT 37605 ||||||||| |||| ||| | | | |||| || ||||||||||| ||| || Sbjct 31339 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 31280 Query 37606 ATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAA-CTTGTCGAACATAAA 37664 | |||||||| ||| || | | | ||| | |||| | | || ||| ||| ||| Sbjct 31279 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATT-TCATGAAGCTTCAAGAAATCAAA 31221 Query 37665 ----TACGTTAT--TATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGC 37718 | || | | |||||||||||||| || ||||| || ||| |||||| || || Sbjct 31220 AGTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGC 31161 Query 37719 AACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGT 37778 |||||||| | || ||| | ||| || ||||| | |||| || | || || Sbjct 31160 TACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGT 31101 Query 37779 TCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTA 37828 || | ||| ||||||| ||||||| ||| ||||||||| || ||| || Sbjct 31100 ACCAAGATTCTTTTGATTAGATTTTTCATTGCAAGAATCTATAAATATTA 31051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468440020437440