Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1330 347 2e-90 seq3144 199 6e-46 seq453 111 2e-19 >seq1330 Length=20794 Score = 347 bits (384), Expect = 2e-90 Identities = 673/988 (68%), Gaps = 14/988 (1%) Strand=Plus/Plus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| || || || ||||||||||| ||| |||||| ||| | ||| |||| | Sbjct 17082 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGA----TCAAATA 17137 Query 79920 CCACTCTCCATCATCCTTT------ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 79973 |||| | || ||| ||| || | ||||||||| ||||| | || |||||| || Sbjct 17138 A-ACTC-CAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGC 17195 Query 79974 TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 80033 ||||| ||| | | | | || || ||||| ||||| ||||| | ||| | || Sbjct 17196 ATAAAATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAA 17255 Query 80034 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTT 80093 | | ||| |||| |||||||| ||| || || || || | | ||||| |||||||| Sbjct 17256 ATCAAAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTT 17315 Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | |||||||| || ||||||||||| | ||||| |||||||| || Sbjct 17316 TCCTCCTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCC 17375 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| || |||||| || || | ||||| ||| | |||||||| ||| ||| Sbjct 17376 ATTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTT 17435 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| || || ||||| | ||||| || | ||||||| ||| || ||||||||||| Sbjct 17436 CACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGAT 17495 Query 80274 GCCCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 80332 |||||||| |||||| |||| ||||| |||||||| || || | ||| | | | Sbjct 17496 TCCCTCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAG 17554 Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392 || || |||||||| || || ||||| ||||| ||||| | ||||| |||| |||| Sbjct 17555 GTGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGAT 17614 Query 80393 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTA 80452 |||| || |||||||| | ||| ||||| | ||||| || ||||| || ||||| | Sbjct 17615 TGTAAGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAA 17674 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 ||| || || || | || | | || | |||| || | |||||| |||| | Sbjct 17675 GCATATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAA 17734 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 80572 ||||||||| |||||||| || ||| | | |||| || ||||| || || || | Sbjct 17735 GAGTTTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAA 17794 Query 80573 GTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTTGAAATAATCGGAGAATGTT 80632 |||| ||| || || | || | || || | ||||| || | | ||| Sbjct 17795 GTTTTTCCGAATTGTTCATCACAATATTATAAGTTTTTTCAGAAATCATTGACGCGCGTT 17854 Query 80633 TCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttt 80692 |||| |||| ||||| | ||| || | | ||| || | || | ||| | ||||| Sbjct 17855 TCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTT 17914 Query 80693 ttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGAT 80752 | ||||| || || ||||| || || || || | || || | | |||||| || |||| Sbjct 17915 TAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGAT 17974 Query 80753 GTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTA 80812 ||| || || | || || |||| || |||| | | || ||||| || || | | Sbjct 17975 GTTTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAA 18034 Query 80813 CTCCATTATATATTCCTTGGATAACCTT 80840 | || | ||| | |||| || ||||| Sbjct 18035 CACCTTGATAAACTCCTGAAATGACCTT 18062 Score = 86.0 bits (94), Expect = 9e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 79600 ACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 79659 ||||||||| ||| || | | |||| ||||| || || || |||| | || | Sbjct 16751 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 16810 Query 79660 TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTA 79719 |||| | || || || || | |||||||| || || || || | ||||||||||||| Sbjct 16811 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 16870 Query 79720 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGAT 79779 || ||||| | ||| || || || || | || ||||| ||||| ||||| ||| Sbjct 16871 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 16930 Query 79780 TCTATAATCGCTTTCCAGAC 79799 || | ||| ||| ||||||| Sbjct 16931 TCAAGAATTGCTGTCCAGAC 16950 >seq3144 Length=5517 Score = 199 bits (220), Expect = 6e-46 Identities = 325/458 (71%), Gaps = 10/458 (2%) Strand=Plus/Minus Query 49656 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 49715 ||||||||| |||||| || || || |||||||| || ||||| ||||| |||| Sbjct 5029 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 4970 Query 49716 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA-AAtttttttAAATC 49774 || || ||||| |||||||| ||||| |||||| |||||| | | Sbjct 4969 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-- 4912 Query 49775 CCAATT--CAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCAT-TTCAC 49831 |||| | || ||| |||||||| || |||||||| |||||| ||||||| | ||| | Sbjct 4911 CCAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC 4853 Query 49832 AATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATA 49891 ||||| || || | |||||||| | || | || | |||||||||||| || | | Sbjct 4852 G-TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAA 4794 Query 49892 CCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAA-ATGTTTA 49950 |||| || | |||||||| | || |||| | ||| | |||| || ||| | Sbjct 4793 CCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTG 4735 Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 || | | |||||| ||||| || |||| || || |||| | |||||||||||||||| Sbjct 4734 AATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAA 4675 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || | ||| ||||| | || | || || | |||||| || ||||| || | ||| Sbjct 4674 AAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCA 4615 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 |||||||| |||||||| || |||||||| || ||||| Sbjct 4614 GAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 4577 Score = 178 bits (196), Expect = 2e-39 Identities = 228/310 (74%), Gaps = 6/310 (2%) Strand=Plus/Minus Query 50221 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 50280 || || | ||||| ||| ||||| || |||||||| ||||| || ||||| || Sbjct 4382 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 4323 Query 50281 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCA 50340 ||||||||||| || |||||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 4322 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 4263 Query 50341 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 50400 ||||||||||||| || || || || ||| ||||| || ||||| || || ||| Sbjct 4262 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 4203 Query 50401 AAATGTTTTTCGTTGGGTGTT-AGTTTA---TTCCAATCATTGATATCTTTAGATATATC 50456 || |||||| || ||| |||||| | ||||||||| ||||| || || | || Sbjct 4202 AAGAATTTTTC-TTCATCGTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 4144 Query 50457 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGT-CAT 50515 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| | || Sbjct 4143 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGATCTACAC 4084 Query 50516 GATATTGGAT 50525 ||||| ||| Sbjct 4083 AATATTTGAT 4074 >seq453 Length=43245 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 80284 CTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 80343 |||||||| |||| | | || ||| ||||| |||||||| | | || || ||| Sbjct 30221 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 30162 Query 80344 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCA 80403 ||||| || || ||| || || ||||| |||| || |||| || ||| || || ||| Sbjct 30161 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 30102 Query 80404 ATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGA 80463 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 30101 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 30042 Query 80464 GGTCTTTCAAC 80474 ||||||||||| Sbjct 30041 GGTCTTTCAAC 30031 Score = 89.7 bits (98), Expect = 7e-13 Identities = 135/191 (71%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 79057 ACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATATGGT 79113 |||||||||||||| ||| ||||| ||| || |||||||| || || |||||| Sbjct 31915 ACTACTTGAAATTCCCCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGT 31859 Query 79114 TCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACC 79173 || | ||||||| ||||| | ||| ||| || ||||| || ||||| ||||| | | Sbjct 31858 TCAAAGCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATC 31799 Query 79174 AATAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAA 79233 || ||| ||||| | || ||| ||||| || ||||| | | |||| ||||| Sbjct 31798 AACAAAGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCAT 31739 Query 79234 AGATCAGACGG 79244 |||| || || Sbjct 31738 CGATCTGAAGG 31728 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718138829260640