Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq3144 264 1e-65 >seq3144 Length=5517 Score = 264 bits (292), Expect = 1e-65 Identities = 380/530 (72%), Gaps = 12/530 (2%) Strand=Plus/Minus Query 13346 CTTTGTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAG 13405 || ||||| ||||| || ||||||||| || || | ||||||||| || || | Sbjct 5039 CTCTGTTACTCATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTG 4980 Query 13406 TTTTACCTTCCAGTGATATATTT---TCCATAAAATCGAATGGATTTGTTGACATAAACA 13462 ||||||||| || | || || ||||||||||| || ||||| ||| || ||| Sbjct 4979 TTTTACCTT---GTAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACA 4923 Query 13463 CTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACA 13522 ||| | | ||| ||| | | ||||||||||||||| | ||| |||||||||| || Sbjct 4922 ATTTTGCTCCACCAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCA 4863 Query 13523 TTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTT 13582 |||||| |||||||| |||| || || || | | | ||||||||||||| || Sbjct 4862 TTAAATTCGCGTTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTT 4803 Query 13583 CTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTT- 13641 |||| | || || || ||||||| ||| || || || | ||||| | Sbjct 4802 CTATTGTAACCGCTTCCGCTATAATAG-CTTC-TACAGTTTTT-GTTGGAGGTCGTGCAC 4746 Query 13642 --AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAA 13699 ||||| | || | | ||| |||||||||||||| | || ||||||| | ||| | Sbjct 4745 GAAGATGAGTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTA 4686 Query 13700 GTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAG 13759 ||||||| ||||| |||||||||||||||| ||||| ||| ||||||||||| |||| | Sbjct 4685 GTTCGTTGGAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACG 4626 Query 13760 CGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAA 13819 |||| | ||| |||||||||||||| ||||| || |||||||||| || ||||| ||| Sbjct 4625 CGAAAGCTCCAGAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAA 4566 Query 13820 ACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAttttttt 13869 | || | || || | || |||||| |||||| || | ||||||| Sbjct 4565 ATGAAGATTCCTTATCGGAAATCCATCGAAGAGCCCAATCCGCTTTTTTT 4516 Score = 143 bits (158), Expect = 3e-29 Identities = 192/264 (73%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 13954 TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14013 |||||||| || || || ||||| || |||||||| |||||||||||||| |||||| Sbjct 4352 TACATTTCTGAATGGATATTTTCGATCATGATCTGAAATCCATAAAAACATCTTGCTTCT 4293 Query 14014 GACCATTGTACCTCCG-AGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACT 14072 | ||| || || | ||||| | ||| | || |||||||| ||||||||||| Sbjct 4292 GGAATTTGGACTTCATTACTAAAA-CGTTCCACTAAATTTTCATTGACAATACCATCCGA 4234 Query 14073 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTT--- 14129 || ||||| || ||||| | || ||||||| ||| ||||||| ||| ||||| Sbjct 4233 GGCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAATTTTTCTTCATCGTTAAGTTTATA 4174 Query 14130 TTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGAC 14189 | |||||| | |||||| ||||| || ||||| ||||| |||||||| ||| | Sbjct 4173 CTCCCAATCATTCATATCCTTGGAAAGGTCAACTTCCTCAACAGTCCAAAATGAAGCTTC 4114 Query 14190 AGCTTTTTTATACATTACCCATAT 14213 || ||||| |||||| ||| || Sbjct 4113 GGCCTTTTTGTACATTTGCCAGAT 4090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478502199356640