Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1364 131 1e-25 seq2123 104 2e-17 seq1318 102 6e-17 seq348 100 2e-16 seq352 93.3 3e-14 >seq1364 Length=43964 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||| | ||||| ||| ||||||||| | ||||||||| ||||| |||||| | || || Sbjct 15908 CACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCTTC 15849 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||||||||| |||||||| ||||| || || ||||| | || | |||||||| || Sbjct 15848 CAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTG 15789 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 ||| | |||| ||| | ||| || || | ||| || || | || |||||||| Sbjct 15788 AATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTT 15729 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||| ||||| || || ||||||||||| Sbjct 15728 ACCGGTAAGAGTCTTAACGAAAATTTGCAT 15699 >seq2123 Length=30488 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||||||||| | || ||| ||||| | |||||| || || Sbjct 14795 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 14854 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || || | |||||| ||||| ||||| | || || ||||| | || Sbjct 14855 AGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGA 14914 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| |||| ||| | | || ||| || ||| || Sbjct 14915 ATACCTTCTTTGTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACT 14974 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| ||||||||||| |||||||||||||| Sbjct 14975 TCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 15021 >seq1318 Length=24839 Score = 102 bits (112), Expect = 6e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || ||||| | |||||||||||| | || |||| | || || || ||||| || ||||| Sbjct 4042 TCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAAT 3983 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 || || || |||||||| | || | |||||||| || || ||||||||| | Sbjct 3982 ATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTA 3923 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | || |||| | || || |||| || || ||||| || || || ||||| ||| Sbjct 3922 TCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACA 3863 Query 43099 AAAATTTGCATTTT 43112 ||||||||||| || Sbjct 3862 AAAATTTGCATGTT 3849 >seq348 Length=51996 Score = 100 bits (110), Expect = 2e-16 Identities = 157/223 (70%), Gaps = 10/223 (4%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| ||||| | || | ||| || |||| ||| ||||| | || ||||| ||| Sbjct 39578 CCTCCACGTAGTCTAAGTACAAGATGAATTGTGCACTCTTTTTGGATATAATAATCTGAC 39637 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| | || || ||||| |||| |||||||| | || |||||||| | || Sbjct 39638 AAGGTACGTCCTTCTTCTAATTGCGTGCCAGCAAAAATAAGGCGTTGTTGATCAGGAGGA 39697 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA-- 43060 | |||||||| || ||| ||| | | || ||| ||| || | |||| Sbjct 39698 ATTCCTTCTTTGTCATAAATCTTACATTTAAGTTTGTCAATTGTATCAC-----TCGAAG 39752 Query 43061 -CGTCTACC--GTTATAGTTTTTCCGGTTAGAGTTTTCACAAA 43100 ||||| | |||| |||||||| ||||| ||||||||||| Sbjct 39753 CCGTCTCCAATGTTAATGTTTTTCCAGTTAGTGTTTTCACAAA 39795 >seq352 Length=65406 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 42906 ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTG 42965 ||||| |||| || ||||| | || || || ||||||||||| | || || ||||| Sbjct 29437 ATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCTTCTAATTG 29496 Query 42966 TTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAA 43025 ||| || || || ||||| || |||||||| | || | ||||||||| || ||| Sbjct 29497 TTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCTTGAATCTT 29556 Query 43026 CTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGT 43085 |||| ||| | | | || || | ||| || || | || || ||||| ||||| Sbjct 29557 TGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGTTTTACCGGT 29616 Query 43086 TAGAGTTTTCACAAAAATTTGCAT 43109 || ||||| || ||||||||||| Sbjct 29617 CAGCGTTTTAACGAAAATTTGCAT 29640 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 42906 ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTG 42965 ||||| ||| |||||||| | ||| || || || || ||||| | || |||||||| Sbjct 28981 ATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTG 29040 Query 42966 TTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAA 43025 ||| ||||| || ||||| || |||||||| | || | |||||| || || ||| Sbjct 29041 TTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTT 29100 Query 43026 CTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGT 43085 |||| ||| | | || || | |||||| || | || || ||||| ||||| Sbjct 29101 TGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGT 29160 Query 43086 TAGAGTTTTCACAAAAATTTGCAT 43109 || || || || ||||||||||| Sbjct 29161 GAGGGTCTTGACGAAAATTTGCAT 29184 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 42906 ATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTG 42965 ||||| ||| || ||||| | ||| ||||| ||||| ||||| | || || ||||| Sbjct 29209 ATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCTTCTAATTG 29268 Query 42966 TTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAA 43025 ||| || || || ||||| || |||||||| | || | ||||||||| || ||| Sbjct 29269 TTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCTTGAATCTT 29328 Query 43026 CTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGT 43085 | ||| ||| | | || || | |||||| || | || || ||||| ||||| Sbjct 29329 CGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGT 29388 Query 43086 TAGAGTTTTCACAAAAATTTGCAT 43109 || || || || ||||||||||| Sbjct 29389 GAGGGTCTTGACGAAAATTTGCAT 29412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381302316391608