Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1318 154 1e-32 seq2123 122 6e-23 seq352 120 2e-22 seq1364 96.9 3e-15 >seq1318 Length=24839 Score = 154 bits (170), Expect = 1e-32 Identities = 160/207 (77%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || |||||||| || ||||||||| || | | |||||||| ||||| ||| Sbjct 4048 GTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCTAACTGTTTACCA 3989 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || |||| ||||||||||| || || ||||||||||| || |||||| ||||| Sbjct 3988 GCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGAATTTTT-TCTTT 3930 Query 15287 -ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGT 15345 || | || |||||||||||| |||| || ||||| |||||||||||||| || || || Sbjct 3929 GACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTGT 3870 Query 15346 TTTTACAAAAATTTGCATATTTGAAAA 15372 ||| |||||||||||||| ||| |||| Sbjct 3869 TTTAACAAAAATTTGCATGTTTAAAAA 3843 >seq2123 Length=30488 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| || || |||||||| || ||||| || || ||| | || || Sbjct 14813 ACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCA 14872 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| || ||| | || | |||||| || || ||||| ||||||||||| | Sbjct 14873 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGA 14932 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || |||||| ||||| || ||||||||| | || || || || ||||||||||| Sbjct 14933 ATCTTTGCT-TTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTT 14991 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||||||| ||||||||||||||| Sbjct 14992 TCCAGTTAGAGTTTTAACAAAAATTTGCATA 15022 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| || || |||||||| ||||| ||||| ||| | | | ||||| ||||| Sbjct 14591 TGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGC 14650 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | ||||||||||| || || || || || ||||| || ||||||| Sbjct 14651 TTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATCCCCTCTTTATCTTGAATTTTG 14710 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | || || || |||||||| ||| || || | |||||| || ||||| || Sbjct 14711 GTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTA 14770 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 || ||||||||||||||||||||| Sbjct 14771 AGTGTTTTTACAAAAATTTGCATA 14794 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||| |||||| || || |||||||| ||||| ||||| || | | ||||||| Sbjct 15269 ACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCA 15328 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC-ACA 15273 | ||||||||||||| | || | |||||| ||||| ||||||||||||||||| | Sbjct 15329 AGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGA 15388 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 | ||||||| || || || || || ||| | ||| || || | ||| || || || Sbjct 15389 ATTTTTGCT-TTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTT 15447 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || |||||||| Sbjct 15448 TCCGGTAAGGGTTTTAACGAAGATTTGCAT 15477 >seq352 Length=65406 Score = 120 bits (132), Expect = 2e-22 Identities = 168/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | || | ||| || ||||| |||||||| ||||| || || | Sbjct 29414 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTC--TG 29471 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | ||| || | |||||||||||||| |||||| | ||||| |||||||| || | Sbjct 29472 ACAATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGG 29531 Query 15255 GAATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCT 15313 | || |||||||| || ||| |||||| || || ||||||||||| ||| Sbjct 29532 GGATACCTTCTTTATCTTGAATCTTTGCT-TTAACTTGGTCTATGGTATCAGAGGACTCT 29590 Query 15314 ACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || | || || |||||||| ||||| ||||| || |||||||||||| Sbjct 29591 ACTTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCATA 29641 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | || | ||| || || || |||||||| || || ||||| | Sbjct 29186 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATC--TG 29243 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || || | |||||||||||||| |||||| | ||||| |||||||| || | Sbjct 29244 ACAACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAG 29303 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || |||||||| || ||| || | ||||| ||||||||||| || | Sbjct 29304 GGATACCTTCTTTATCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGA 29363 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || | ||||| |||||||| || || || || || |||||||||||| Sbjct 29364 CTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCATA 29413 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | || | ||| || || || |||||||| || || ||||| Sbjct 29642 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 29701 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | | ||||| |||||||| |||||| | || || |||||||| || ||| Sbjct 29702 AAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGA 29761 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 |||||||| || || ||| |||||| || || || || ||||| | || || Sbjct 29762 ATTCCTTCCTTATCTTGAATCTTTGCT-TTAACTTGATCAATAGTATCATTGGACTCGAC 29820 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | |||||||||||| || || || || || || || ||||||||| Sbjct 29821 TTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCATA 29869 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || || || |||||||| || || ||||| || | | | | ||||| ||||| Sbjct 28753 ATGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTG 28812 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TT 15278 ||| |||||| | ||||| ||||| || || ||||| ||||| || || ||| || Sbjct 28813 TTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTT 28872 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 |||| || || ||||||||||| || || || | |||||| |||||||| | Sbjct 28873 TGCT-TTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGG 28931 Query 15339 TCAGAGTTTTTACAAAAATTTGCATA 15364 | || || || || |||||||||||| Sbjct 28932 TGAGGGTCTTGACGAAAATTTGCATA 28957 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | || | ||| || || || || ||||| || || || || | Sbjct 28958 CCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGAT 29017 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | ||||| |||||||| || ||| | ||||| |||||||| || || Sbjct 29018 AAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGG 29077 Query 15257 ATTCCTTCTTTGTCACAAAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||| || || ||| |||||| || || ||||||||||| || || Sbjct 29078 ATACCTTCCTTATCTTGAATCTTTGCT-TTAACTTGATCTATGGTATCAGAGGACTCGAC 29136 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||||| |||||||| || || || || || |||||||||||| Sbjct 29137 TTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCATA 29185 >seq1364 Length=43964 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| || | | || | ||| || || || || ||||| || |||||||| | Sbjct 15925 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATC--TG 15868 Query 15197 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 | || || | ||||| |||||||| || || | ||||| ||||| || || | Sbjct 15867 ACAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGG 15808 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATT--TCTATGGTATCGCTATTTTC 15312 |||| ||||||||||| ||| || | ||||| | || || |||||||| || Sbjct 15807 GAATGCCTTCTTTGTCTTGAATCTT-CGCTTTA-ACTTGGTCAATGGTATCTGAGGACTC 15750 Query 15313 TACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| || | ||||| |||||||| || ||||| || || |||||||||||| Sbjct 15749 TACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCATA 15698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362115302081916