Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq2123 113 4e-20 seq1318 98.7 8e-16 seq1364 95.1 1e-14 >seq2123 Length=30488 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | || ||||| |||||||||||||| || | | ||| | ||||| Sbjct 14812 CACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTC 14871 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || |||||||| || |||| || | |||||||| ||| | || |||||||| Sbjct 14872 AAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTG 14931 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || |||||| || ||| |||||| || ||| ||| | ||||||||||| Sbjct 14932 AATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTT 14991 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| |||||| |||||||||||||| Sbjct 14992 TCCAGTTAGAGTTTTAACAAAAATTTGCAT 15021 >seq1318 Length=24839 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| || || || || ||||||||||||||||| | | || | || || Sbjct 4060 ACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCT 4001 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 | ||||||||| ||| | || | | || |||||| ||| | || ||||| || | Sbjct 4000 AACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGA 3941 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| | ||| || | ||| ||||||| | || ||| | |||||||||||| Sbjct 3940 ATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTA 3881 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT-TTTAAA 19047 || || | ||||| |||||||||||||| |||||| Sbjct 3880 CCAGTAAGTGTTTTAACAAAAATTTGCATGTTTAAA 3845 >seq1364 Length=43964 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||| ||||||||||| | || || | || |||| |||||||| Sbjct 15895 GTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACCG 15836 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | | ||||||||| ||| | ||| |||||||| ||| ||| ||| Sbjct 15835 GCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTA 15776 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || ||| | | ||||| | ||| ||| | ||||| |||||||| || | ||| Sbjct 15775 ACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTC 15716 Query 19025 TTGACAAAAATTTGCAT 19041 || || ||||||||||| Sbjct 15715 TTAACGAAAATTTGCAT 15699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414499658475544