Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq352 123 2e-23 seq1364 118 8e-22 seq1318 114 9e-21 seq2123 91.5 1e-13 >seq352 Length=65406 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||||||||| ||| ||| |||| ||||||||||| || || || Sbjct 28766 TCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAG 28825 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| |||||||| || |||| | |||||| |||||| ||| ||| ||| || Sbjct 28826 ATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGG 28885 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | ||||| | | ||| || || | ||||||||||||||||| | ||||| || Sbjct 28886 TCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACG 28945 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 28946 AAAATTTGCAT 28956 Score = 114 bits (126), Expect = 9e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||||||||| || ||| |||| || |||||||| || || || Sbjct 29222 TCTTTTTGAATATTATAATCTGACAACGTACGACCATCTTCTAATTGTTTACCAGCGAAG 29281 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| ||||| || || |||| | ||||||||||||| ||| || ||| || | Sbjct 29282 ATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCTTGAATCTTCGTTTTTACTTGA 29341 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | ||||| | | ||| || || | ||||||||||||||||| | ||||| || Sbjct 29342 TCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACG 29401 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 29402 AAAATTTGCAT 29412 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || |||||||||||||| || ||| ||| |||| ||||||||||| || || || Sbjct 28994 TCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAG 29053 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 ||||| ||||| || || | || | |||||| |||||| ||| ||| ||| || | Sbjct 29054 ATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGA 29113 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 | | ||||| | | ||| || || | ||||||||||||||||| | ||||| || Sbjct 29114 TCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACG 29173 Query 44111 AATATTTGCAT 44121 || |||||||| Sbjct 29174 AAAATTTGCAT 29184 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 |||||||||||||||||||| || |||| |||| ||||||||||| || || || Sbjct 29678 TCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAG 29737 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || || ||||| || || |||| | ||||| |||||| ||| ||| ||| || | Sbjct 29738 ATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGCTTTAACTTGA 29797 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| |||||| | ||| || || | ||||| ||||| || || | ||||| || Sbjct 29798 TCAATAGTATCATTGGACTCGACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACG 29857 Query 44111 AATATTTGCAT 44121 ||||||||||| Sbjct 29858 AATATTTGCAT 29868 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| || | | || | ||| || ||| ||||||||||| ||||| || Sbjct 29413 ACCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGA 29472 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| ||| |||| || |||||||| || || || ||||| ||||| || || | || Sbjct 29473 CAATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGG 29532 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| ||| ||| ||| || | | ||||| | | ||| || Sbjct 29533 GATACCTTCTTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTAC 29592 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || |||||||||||||| | || || || || |||||||| Sbjct 29593 TTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 29640 >seq1364 Length=43964 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| || | | ||| | ||| || || ||| ||||| ||||| ||||| Sbjct 15926 ACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGA 15867 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || ||| |||| ||||||||||| || ||||| ||||| |||||||| ||| | || Sbjct 15866 CAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGG 15807 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| ||| ||| || ||| || ||| ||||||| | ||| || Sbjct 15806 AATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTAC 15747 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| ||||||||||| | |||||| || || |||||||| Sbjct 15746 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 15699 >seq1318 Length=24839 Score = 114 bits (126), Expect = 9e-21 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| |||| || |||||||||||||| |||||| | | ||| |||| || Sbjct 4060 ACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCT 4001 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 || ||||| || |||||||| || ||||| || ||| | || | |||||||||||| | Sbjct 4000 AACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGA 3941 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||||| |||||| || | | ||||| || || || | ||||| |||||| Sbjct 3940 ATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTA 3881 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCATGT 44123 || || | || || ||||| |||||||||| Sbjct 3880 CCAGTAAGTGTTTTAACAAAAATTTGCATGT 3850 >seq2123 Length=30488 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||| || || ||||||||||||||| || || | || |||| || Sbjct 14812 CACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTC 14871 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | |||||| || || || || | |||||||| || | || | ||||||||| ||| Sbjct 14872 AAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTG 14931 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| ||| ||| || | | | ||||| | | ||| || || | ||||| ||||| Sbjct 14932 AATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTT 14991 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || |||| ||| || ||||| |||||||| Sbjct 14992 TCCAGTTAGAGTTTTAACAAAAATTTGCAT 15021 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354715007918448