Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq219 152 6e-32 seq65 102 1e-16 seq7 86.0 7e-12 >seq219 Length=63677 Score = 152 bits (168), Expect = 6e-32 Identities = 250/354 (71%), Gaps = 10/354 (3%) Strand=Plus/Plus Query 7055 TATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTTGTTTTTAATT 7114 || ||| ||||||||||||| | | | || ||||||||||||||| | ||||||||| Sbjct 20474 TACCAGCTGGATTCCAAGCACTGAGAATGATTCGTCTATCATTTGGA-GTATTTTTAATT 20532 Query 7115 TTGT-TATAATTATTTGTAATTGATCTATACCCTGACCTTCATAATTAGTATGACAATTT 7173 || | || | ||| | |||||| | ||| | ||| |||| |||| |||| Sbjct 20533 TTATCGATGACCTCTTGCAGTTGATCAACACCTTTACCAGTGTAATCCGTATCGCAATCA 20592 Query 7174 ATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAAATCACCTTCT 7233 || || | ||| ||||||||||||||||| || ||||||| |||||| |||||||||||| Sbjct 20593 ATGTACTCAGCACCAAAATGTCTCCATTGGAATCCATAAACAGGACCCAAATCACCTTCT 20652 Query 7234 TCACGATGATTAAATCCTAA-TCGATTTAAATTAGATT---TTGATCCATAAGCATCCCA 7289 | | ||| | | | || || | || |||| ||| || |||| | | ||||| Sbjct 20653 TTTCTATG-TGATAGCCCAATTTTATCCAAAT---ATTCACGAGAACCATTACCGTCCCA 20708 Query 7290 AATATGTACAGAtttttttGATAAATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAA 7349 |||||| | | ||||| | ||||| | ||||||| ||||||| |||||||| Sbjct 20709 AATATGAATACCTTTTTCGGTTAAATGTTTGCTATTTGTATTACCTTTAATAAACCATAA 20768 Query 7350 AAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTGTAGTGAATAAAGGGAA 7403 | |||||||| || ||||| ||| | | || || || |||||||| || Sbjct 20769 TAATTCTTCTATAATAGCACGCGTAAAAACGCGCTTAGTTGTTAATAAAGGTAA 20822 Score = 118 bits (130), Expect = 1e-21 Identities = 241/349 (69%), Gaps = 13/349 (4%) Strand=Plus/Plus Query 6700 GGATGAGGATTATAATC--TAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTAT 6757 |||||||| | |||| | ||| ||| |||||| ||| ||||||||||| | ||||| Sbjct 20042 GGATGAGGTTCATAACCAGTAATAAT--AAAATCATCATATTTAAAATCATCAATATTAT 20099 Query 6758 CAGACtttttttttAATATTACAACAGGTGAAGGTTTTATTGATCGAGTT--AATTGTTC 6815 | | ||| | ||| || ||| | || | ||| | | || ||| | ||| Sbjct 20100 TA-ATTTTGCGTCTAAATTTCAAACGAGGAAATGCTTT-TGGTTCACGTTCGATTTGAGT 20157 Query 6816 TTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTC 6875 ||||| ||| || |||||||| ||| ||||||| ||| || | |||||||||||||| Sbjct 20158 TTTTAAAGCATTAATATGATCATTATATATATGAGTATCACCCATGGTATGAATAAATTC 20217 Query 6876 ACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTAC 6935 ||| || | | | | |||||||| | || ||||||| ||||| || | Sbjct 20218 ACCAGGACTACAACCCGTTACATGAGCAATCATATGAGTTAATATAGCATAGCTTGCAAT 20277 Query 6936 ATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAAT 6995 ||||| |||||||| | ||| | ||| ||||||||||||| |||| ||||| | Sbjct 20278 GTTAAATGGTACACCAAGTCCAACATCACATGATCTTTGATAAAGAAGACACGATAATCT 20337 Query 6996 ATT-GTCT---ATAGCATAAAATTGACACAATACATGACATGGAGGTAA 7040 || || | ||| |||| ||||| || || | ||||||||| ||||| Sbjct 20338 TTTCGTATTTGATA-CATAGAATTGGCAAAACATATGACATGGTGGTAA 20385 >seq65 Length=90150 Score = 102 bits (112), Expect = 1e-16 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 19394 CAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGT 19453 |||||||| ||| |||||| | |||||||||||||||||||||||||| || || Sbjct 53813 CAAAAAGGAACAATTGGTATTACATATCGTCAAGAAGATATGCCTTTTACAGCCGAAGGG 53754 Query 19454 ATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGACGCTT 19507 || | ||||| ||| | ||||| || |||||| |||||||||| |||||| || Sbjct 53753 ATTGCACCGGACCTTGTCATTAATCCTCATGCTATTCCAAGTCGTATGACGATT 53700 >seq7 Length=150058 Score = 86.0 bits (94), Expect = 7e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 19354 AATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTAT 19413 ||| || ||||| || ||||| || || | | || ||| ||||| ||| ||| || Sbjct 140203 AATTCCAGAAATTGGAGATAAATTCGCGAGTCGTCATGGTCAGAAAGGAACAATTGGAAT 140262 Query 19414 GATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTAT 19473 | ||||| ||||||||||||||| ||| || ||||||| || || ||||||| Sbjct 140263 CACTTATCATCAAGAAGATATGCCATTTGCTGCTAATGGTATTACACCTGACATTATTAT 140322 Query 19474 TAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || ||||| ||| |||| ||||| ||||| Sbjct 140323 AAATCCACACGCTATTCCTAGTCGTATGAC 140352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595764176961600