Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq352 107 2e-18 seq2123 102 7e-17 seq1364 95.1 1e-14 >seq352 Length=65406 Score = 107 bits (118), Expect = 2e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| || || | || | || | ||| ||||| ||||| | Sbjct 29630 AAAATTTGCATACCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATA 29689 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| || ||| ||| |||| ||||| || | |||||||| | ||| Sbjct 29690 TTATAATCTGACAAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGT 29749 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||||||||| ||||| || || | ||| ||||| || || | | ||| ||| Sbjct 29750 TGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCAATAGTATCA 29809 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| |||| || |||||||| |||||||| || || || || || ||||| Sbjct 29810 TTGGACTCGACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 29868 Score = 96.9 bits (106), Expect = 3e-15 Identities = 167/241 (69%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| || || | || | || | ||| ||||| ||||| | | Sbjct 29402 AAAATTTGCATACCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATG 29461 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 ||||| || | | | ||| || ||| || | ||||| || | ||||| || | || Sbjct 29462 TTATAGTC--TGACAATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTT 29519 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 | |||||||| || ||||||||||| || | ||| ||||| || || | | | || | Sbjct 29520 GTTGATCTGGGGGGATACCTTCTTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTAT 29579 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| | || || |||| ||||| ||||| || || || ||||| || || || |||| Sbjct 29580 CAGAGGACTCTACTTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCA 29639 Query 95007 T 95007 | Sbjct 29640 T 29640 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTT 94867 ||||||||| ||||| | |||||||| ||| || || ||| |||| ||||| Sbjct 28759 AGTAGATTCTTTTTGAATATTATAATCCG--ATAAAGTACGACCATCTTCCAATTGTTTA 28816 Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 || | ||||| || | |||||||||||||||||||||||| || || | ||| ||||| Sbjct 28817 CCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTTGCT 28876 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || | | | || |||| | || || |||| || || ||||| || || || Sbjct 28877 TTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGG 28936 Query 94988 GTTTTCACAAAGATCTGCAT 95007 || || || || || ||||| Sbjct 28937 GTCTTGACGAAAATTTGCAT 28956 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || ||||| || || | || | || | ||| ||||||||||| | Sbjct 28946 AAAATTTGCATACCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATA 29005 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 ||||| || | ||| | ||| |||| ||||| ||| | ||||| || | ||| Sbjct 29006 TTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGT 29065 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||| || |||||||| || || | ||| ||||| || || | | || ||| Sbjct 29066 TGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCA 29125 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| |||| || || ||||| || || || || || || || || ||||| Sbjct 29126 GAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 29184 >seq2123 Length=30488 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| || ||||| ||| | || || | | |||||||||||| |||||||||||||| Sbjct 14866 ATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTT 14925 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| ||||| || || ||| || || | || || || | || || Sbjct 14926 GTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAAT 14985 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||| |||||||| ||||| || ||||| Sbjct 14986 GGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 15021 Score = 102 bits (112), Expect = 7e-17 Identities = 146/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 94810 AGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTT 94867 ||| || || ||||| | ||||||||| | | || || || || || || ||||| Sbjct 15280 AGTTGACTCTTTTTGAATGTTATAATC--TGAAAGGGTACGACCGTCTTCAAGTTGTTTG 15337 Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 || | || || | | |||||| ||||| ||||| ||||||||||| | ||||||||| Sbjct 15338 CCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTTTGCT 15397 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 || || | | | |||||| | || || |||| ||||| || ||||| ||||| Sbjct 15398 TTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGG 15457 Query 94988 GTTTTCACAAAGATCTGCATGCTT 95011 ||||| || ||||| |||||| || Sbjct 15458 GTTTTAACGAAGATTTGCATGATT 15481 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/206 (69%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGC 94861 ||| | ||| ||||| ||||| | ||||||||| | || || || ||| |||| Sbjct 14590 GTGAAGAGTTGATTCTTTTTGGATGTTATAATCCG--AAAGAGTACGACCATCTTCCAAT 14647 Query 94862 TGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATT 94921 || || || | || || || | ||||||||||||||| || || ||||| || | |||| Sbjct 14648 TGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATCCCCTCTTTATCTTGAATT 14707 Query 94922 TTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCA 94981 || | || || | | || |||| ||||| |||| || || || || ||| Sbjct 14708 TTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCA 14767 Query 94982 GTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| ||||| || ||||| Sbjct 14768 GTAAGTGTTTTTACAAAAATTTGCAT 14793 >seq1364 Length=43964 Score = 95.1 bits (104), Expect = 1e-14 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || || ||||| || || | ||| | || | ||| || |||||||| | Sbjct 15938 AAAAATCTGCATACCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGAT 15879 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || ||||| || || ||| |||| ||||| ||| ||||||| || | ||| Sbjct 15878 ATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTG 15819 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 |||||| || ||||| ||||||||||| | ||| || || || || | | | || || Sbjct 15818 CTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATC 15759 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || |||| || || ||||| || |||||||| || || || || ||||| Sbjct 15758 TGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 15699 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 94861 CTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAAT 94920 |||||| || |||| || |||||||| ||||||||||| |||||||||||||| | ||| Sbjct 16073 CTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCTTTGTCTTGAAT 16014 Query 94921 TTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 |||| |||||| | | || |||| || || |||| || || ||||| || Sbjct 16013 CTTTGTCTTGACTTGTTCAATTGTATCAGAAGATTCAACTTCAAGAGTAATAGTTTTCCC 15954 Query 94981 AGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| |||||||| Sbjct 15953 GGTGAGGGTCTTTACAAAAATCTGCAT 15927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448210081707360