Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1330 342 6e-89 seq3144 190 3e-43 seq453 105 8e-18 >seq1330 Length=20794 Score = 342 bits (378), Expect = 6e-89 Identities = 670/984 (68%), Gaps = 6/984 (1%) Strand=Plus/Plus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA-CACATCAACG 63195 ||| || || || |||||||||| || |||||| |||| ||||| || || ||| Sbjct 17082 TTCAAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAATAAACT 17141 Query 63196 ACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 63254 | | | || | | |||| | | ||||||||| ||||| | || |||||| || | Sbjct 17142 CCAATTATCATT--TGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCATAA 17199 Query 63255 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63314 |||| ||| | | | | ||| || ||||| ||||| ||||| | ||| | || | Sbjct 17200 AATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAATCA 17259 Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374 | ||| |||| |||||||| ||| || || || || | | || || |||||||||||| Sbjct 17260 AAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTTCCT 17319 Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434 || ||||| | |||||||| || ||||||||||| | ||||| |||||||| || ||| Sbjct 17320 CCTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCATTT 17379 Query 63435 GATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 63494 || |||||| || || | ||||| ||| | |||||||| ||| ||| | | Sbjct 17380 GAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTCACA 17439 Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || || || ||||| | ||||| || | ||||||| ||| || || |||||||| ||| Sbjct 17440 CCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATTCCC 17499 Query 63555 TCTATGCTATCATCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613 ||||| |||||| |||| ||||| |||||||| || || | ||| | | | || Sbjct 17500 TCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGGTGT 17558 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673 || |||||||| || || ||||| ||||| ||||| | ||||| || | |||||||| Sbjct 17559 GCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATTGTA 17618 Query 63674 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63733 || |||||||| | || ||||| | ||||| || || || || ||||| | ||| Sbjct 17619 AGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAGCAT 17678 Query 63734 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 || || || | || | | || |||| || | || ||| |||| | ||| Sbjct 17679 ATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAGAGT 17738 Query 63794 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTT 63853 |||||| |||||||| || ||| | | |||| || ||||| || || || ||||| Sbjct 17739 TTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAGTTT 17798 Query 63854 ATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAAATAATCGGAGAATGTTTCCC 63913 ||| || || | || |||| || | ||||| || | | ||||||| Sbjct 17799 TTCCGAATTGTTCATCACAATATTATAAGTTTTTTCAGAAATCATTGACGCGCGTTTCCC 17858 Query 63914 ATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGT 63973 |||| ||||| | ||| || | | ||| || | || | ||| | |||||| || Sbjct 17859 TGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTTTTTAGT 17918 Query 63974 TTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTG 64033 ||| || || ||||| || || || || | || || || | |||||| |||||||||| Sbjct 17919 TTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGGATGTTT 17978 Query 64034 TGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCC 64093 || || | || || |||| || |||| | | || ||||| || || | || || Sbjct 17979 AGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGCTAACACC 18038 Query 64094 ATTATATATTCCTTGAATAACCTT 64117 | ||| | |||| ||| ||||| Sbjct 18039 TTGATAAACTCCTGAAATGACCTT 18062 Score = 104 bits (114), Expect = 3e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 62877 ACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62936 ||||||||| ||| || | | |||| ||||| || || || |||| | || | Sbjct 16751 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 16810 Query 62937 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTA 62996 |||| | ||||| || || | ||||||||| ||||| || || | ||||||||||||| Sbjct 16811 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 16870 Query 62997 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 63056 || ||||| | ||| || || || || |||| ||||| ||||| ||||| ||| Sbjct 16871 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 16930 Query 63057 TCTATAATCGCTTTCCAGAC 63076 || | ||| ||| ||||||| Sbjct 16931 TCAAGAATTGCTGTCCAGAC 16950 >seq3144 Length=5517 Score = 190 bits (210), Expect = 3e-43 Identities = 231/310 (75%), Gaps = 6/310 (2%) Strand=Plus/Minus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 || || | ||||| ||| ||||| || |||||||| ||||| || ||||| || Sbjct 4382 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 4323 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCC 33684 ||||||||||| || |||||||| || || | ||| || ||||| ||| ||| |||||| Sbjct 4322 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 4263 Query 33685 GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33744 | ||||||||||| || || || || ||| ||||| || ||||| || || ||| Sbjct 4262 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 4203 Query 33745 AAATATTTTTCGTC-TGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATATATC 33800 || ||||||| || | || | |||||| | ||||||||| ||||| || || | || Sbjct 4202 AAGAATTTTTCTTCATCGT-TAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 4144 Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGT-CAT 33859 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| | || Sbjct 4143 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGATCTACAC 4084 Query 33860 AATATTGGAT 33869 |||||| ||| Sbjct 4083 AATATTTGAT 4074 Score = 190 bits (210), Expect = 3e-43 Identities = 323/458 (71%), Gaps = 10/458 (2%) Strand=Plus/Minus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 ||||||||| |||||| || || || |||||||| || ||||| ||||| |||| Sbjct 5029 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 4970 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATA-AAtttttttAAATC 33118 || || ||||| |||||||| ||||| |||||| |||||| | | Sbjct 4969 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-- 4912 Query 33119 CCAATT--CAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCAT-TTCAC 33175 |||| | || ||| |||||||| || || ||||| |||||| ||||||| | ||| | Sbjct 4911 CCAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC 4853 Query 33176 AATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATA 33235 ||||| || || | |||||||| | || | || | |||||||||||| || | | Sbjct 4852 G-TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAA 4794 Query 33236 CCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAA-ATGTTTA 33294 |||| || | |||||||| | || |||| | ||| | |||| || ||| | Sbjct 4793 CCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTG 4735 Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 || | | |||||| ||||| || |||| || || |||| | |||||||||||||||| Sbjct 4734 AATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAA 4675 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || | ||| ||||| | || | || || | |||||| || || ||||| | |||| Sbjct 4674 AAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCA 4615 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAG 33452 |||||||| |||||||| || || ||||| || | ||| Sbjct 4614 GAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 4577 >seq453 Length=43245 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 63561 CTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 63620 |||||||| |||| | | || ||| ||||| |||||||| | | || || ||| Sbjct 30221 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 30162 Query 63621 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63680 ||||| || || ||| || || ||||| |||| || || | || ||| || || ||| Sbjct 30161 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 30102 Query 63681 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63740 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 30101 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 30042 Query 63741 GGTCTTTCAAC 63751 ||||||||||| Sbjct 30041 GGTCTTTCAAC 30031 Score = 82.4 bits (90), Expect = 1e-10 Identities = 134/192 (70%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 62334 ACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATACGGT 62390 |||||||||||||| ||| ||||| ||| || |||||||| || || || ||| Sbjct 31915 ACTACTTGAAATTCCCCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGT 31859 Query 62391 TCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62450 || | | ||||| ||||| | ||| ||| || |||||||| ||||| ||||| | | Sbjct 31858 TCAAAGCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATC 31799 Query 62451 AATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAA 62510 || ||| ||||| | || ||| ||||| || ||||| | | |||| | ||| Sbjct 31798 AACAAAGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCAT 31739 Query 62511 AGATCCGACGGT 62522 |||| || ||| Sbjct 31738 CGATCTGAAGGT 31727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622834477704160