Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1330 214 5e-50 seq3144 183 8e-41 >seq1330 Length=20794 Score = 214 bits (236), Expect = 5e-50 Identities = 590/888 (66%), Gaps = 20/888 (2%) Strand=Plus/Minus Query 363097 TATGATGGTGTTACAACTGTTCAGCTAGACAATCTTGCCGTAGAAACTGCAACTTATCTG 363156 ||| | ||||||| |||||| | |||| ||| | || | |||||| || | ||| || Sbjct 18044 TATCAAGGTGTTAGCACTGTTGAATTAGATAATTTGGCTGCAGAAACGGCCGCGTATATG 17985 Query 363157 ACCATGACGCATCCTGATTACTCCAAACTGGCTGCTCGCATTGCAGTTTCGTCTCTTCAT 363216 || | | ||||| || || || || |||||||| ||||| ||||| ||||||| Sbjct 17984 ACGACTAAACATCCGGACTATGCCGTCCTTGCTGCTCGTATTGCTGTTTCTAATCTTCAT 17925 Query 363217 AAAATGACATCAAATAAGTTTT--CCAGTGTCATGGATAGTCTGTATAACTATGTCAATA 363274 ||| || | ||| ||||||| ||| ||| | || ||| ||||| ||| | ||| Sbjct 17924 AAA--GAAACTAAAAAAGTTTTTTCCAATGTTGTTGAAGATCTTTATAATTATATAAATC 17867 Query 363275 CAAAGACCGGTAAGTGGTCACCACTCATTGCCGATGACA-TTATTGAAT-GT-ATCCGTT 363331 | || || || || | | || | ||| | || | | |||| || || || | Sbjct 17866 CGAAAACAGGGAAACGCGCGTCAATGATTTCTGAAAAAACTTATAATATTGTGAT--GAA 17809 Query 363332 CTAATGCGGAAGTTTTCGATG--ACGTTATCAATTATGAGAAGGATCTCGAGTATGATAT 363389 | ||| ||||| | || ||| |||| |||||| | ||| | ||| || Sbjct 17808 C-AATTCGGAAAAACTTAATTCTACG--ATCATTTATGATAGAGATTATAAATATAATTA 17752 Query 363390 TTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGA 363449 ||| |||| ||| || | || | ||| || || | || || ||| | ||| || Sbjct 17751 TTTTGGATTTAAAACTCTTGAAAGATCTTATCTTTTACGAATAGGTGGAAAAGTTGCCGA 17692 Query 363450 ACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGC 363509 || || || |||||| | ||||| || || |||| || || | ||| | || || Sbjct 17691 GCGTCCCCAACATATGCTTATGCGCGTAGCGGTTGGGATTCACGGAGATGATATCGAAGC 17632 Query 363510 CGCGATTGAAACATATAAGCT--TCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACA 363567 || |||||||| || || || | | || || | || || ||||| | || || Sbjct 17631 TGCTATTGAAACTTACAATCTGATGTCAGAAAA-GT-TCTTTACTCACGCATCTCCGACT 17574 Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAG 363627 ||| |||||||| || | || || || | || ||| |||||| ||| ||||| Sbjct 17573 TTGTTTAATGCTGGCACACCTAGACCTCAACTTTCGAGTTGTTTTCTTTTAACTATGAAA 17514 Query 363628 GACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT 363687 || ||||| || ||||| |||| ||| || | || | || || | ||||| |||| | Sbjct 17513 GATGATTCAATAGAGGGAATCTATGATACTTTGAAAACATGCGCAATGATTTCTAAGACT 17454 Query 363688 GCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGCGG 363746 ||||| || |||||||| || || || ||||||| |||| | ||| ||| || Sbjct 17453 GCAGGTGGTATTGGTGTGAACATTCATAACATTCGTGCGACAGGATC-TTATATTGCTGG 17395 Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806 ||| || || || ||||| | |||||||| | || || | | | |||||||| || Sbjct 17394 AACAAATGGTTATTCAAATGGAATTATTCCCATGTTACGCGTTTATAATAATACTGCTAG 17335 Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866 || || || || || ||| || || || ||||||||||| ||| | || | Sbjct 17334 ATATGTTGATCAAGGAGGAAACAAACGTCCGGGCGCGTTTGCTATTTATTTAGAAACGTG 17275 Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926 ||| | || |||||||| ||| | || | ||||| || |||||||| ||| | || Sbjct 17274 GCATCCTGACATTTTTGATTTTATGGATTTAAAAAAAAATACTGGAAAAGAAGAAGTTCG 17215 Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAA 363974 |||||| ||| | || ||||||||||||||||| || | ||||||||| Sbjct 17214 TGCACGGGATTTATTTTATGCACTTTGGGTTTCGGATCTTTTTATGAA 17167 >seq3144 Length=5517 Score = 183 bits (202), Expect = 8e-41 Identities = 359/521 (69%), Gaps = 16/521 (3%) Strand=Plus/Plus Query 22438 AATAAGGCAGATTGGGCGCTGAAATGGATGAACAAT---GAACGTTCATTCGCGGAACGT 22494 || || || |||||||| || |||||| | || ||| |||||| || |||||| Sbjct 4517 AAAAAAGCGGATTGGGCTCTTCGATGGATTTCCGATAAGGAATCTTCATTTGCTGAACGT 4576 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTG-CAATCTT 22553 ||| | || ||||| | |||||||| || |||||||||||||| ||| | | ||||||| Sbjct 4577 CTTGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGGAGC-TTTCGCGTCAATCTT 4635 Query 22554 TTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCG 22613 |||| |||| ||| | | ||| ||||| || |||| ||||| || || ||||| || Sbjct 4636 TTGGTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTTCCAACGAACTAATTTCTCG 4695 Query 22614 AGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCAT-ATCATTCATA 22672 |||||| || | ||| |||||||| ||| | ||| || | |||| || | || Sbjct 4696 AGATGAAGGATTGCATTGTGATTTTGCATGTCTCTTAT-TC--ACTCATCTTCGTGCA-C 4751 Query 22673 AACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTAT 22732 || |||| |||||||| | |||||| | | || ||| | | |||| || Sbjct 4752 GACCTCCAACAAAAACTGTAGAAGCTATTATAGCGGAAGCGGTTACAATAGAACAAGAAT 4811 Query 22733 TTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACAT 22792 || | || || |||||||| | | | |||||||| || || | | ||||| | || Sbjct 4812 TTTTAACAGAAGCATTACCAGTTAATTTAATTGGTATGAACGCGAATTTAATGAAAAAAT 4871 Query 22793 ATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAACG 22852 ||||| ||||||| || ||| | ||||| | |||| ||| ||||| ||||| Sbjct 4872 ATATTGAATTTGTAGCTGATAGATTATTAGTGGCACTTGGTGGAGCAAAATTGTATAATT 4931 Query 22853 TCGTTAATCCATTTGAATGGATGGA---ACTTATTTCACTTGAAGGAAAGACCAATTTCT 22909 | ||||| ||||| | ||||| | ||| || || |||| || || ||||||| Sbjct 4932 CAGAGAATCCTTTTGATTTTATGGATTTAATTAGTTTAC---AAGGTAAAACAAATTTCT 4988 Query 22910 TCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 | |||||| | || || || |||||||| || |||||| Sbjct 4989 TTGAAAAACGCGTATCAGATTATCAAAAAGCTGGAGTTATG 5029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303111862120232