Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq2123 122 7e-23 seq1318 113 4e-20 seq352 107 2e-18 seq1364 100 2e-16 seq348 91.5 1e-13 >seq2123 Length=30488 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || || ||||| || || ||||| || || ||| | ||| || || | Sbjct 15477 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 15418 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| ||| ||||| ||| ||||||| || |||||||| | ||| || ||| Sbjct 15417 GACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTCCCCCAGACCAG 15358 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | ||||||| || ||||||||| | ||||| | ||| | | ||||||||| Sbjct 15357 CAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAAC 15298 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||||||||| ||| | ||| | || | || | || ||||| Sbjct 15297 ATTCAAAAAGAGTCAACTCTTCATCTAGTACTTCGACTTCGCGGAGG 15251 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| || || |||||||||||||| | ||| ||||| | Sbjct 15021 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 14962 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | ||||||||| ||| ||| || |||||||| | ||| |||||| Sbjct 14961 GATACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 14902 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | || |||| || || |||||| | || |||| |||| | | || || || Sbjct 14901 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 14842 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 |||||||||||||| || | ||| ||||| Sbjct 14841 ATTCAAAAAGAGTCAACACTTCATTTGGTG 14812 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || || || || ||||| || |||||||| ||| | || |||||| Sbjct 15249 ATGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 15190 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | ||||||||| |||||| ||||| || || ||||| || ||| Sbjct 15189 GATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 15130 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | || |||| || || |||||| | || |||| |||| | |||| || || Sbjct 15129 CAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAAT 15070 Query 115466 ATTCAAAAAGAGTCTACTATACAT 115489 ||||||||||| || ||| | ||| Sbjct 15069 ATTCAAAAAGAATCCACTCTTCAT 15046 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| || || || || || |||||| | || || || Sbjct 14793 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 14734 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| || || ||| |||||| |||||||| || |||| |||||| Sbjct 14733 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGGATCCCTCCAGATCAG 14674 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | |||| || || || ||||| ||||||| || | | ||||||||| Sbjct 14673 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 14614 Query 115466 ATTCAAAAAGAGTCTACT 115483 || |||||||| || ||| Sbjct 14613 ATCCAAAAAGAATCAACT 14596 >seq1318 Length=24839 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 115280 TTAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAG 115339 ||||| |||||||||||||| ||||| || || || ||||||||||| | ||| || Sbjct 3846 TTAAACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAA 3905 Query 115340 TCCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTT 115399 ||||| || | | |||| ||| |||||||| ||||||||||| ||||| Sbjct 3906 AGTAGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCG 3965 Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 ||||| ||| | | || | ||| || ||||| |||||||||| | | ||||| Sbjct 3966 GATCAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTCCGAT 4025 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGT 115494 || || ||||||||||| || || |||| |||| Sbjct 4026 TACAATATTCAAAAAGAATCAACATTACACTTGGT 4060 >seq352 Length=65406 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| || ||||| || ||||| ||||| | ||| |||||| Sbjct 29412 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 29353 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | ||||||||| || ||| ||||||||||| |||| ||||| Sbjct 29352 GATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAA 29293 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | || || |||||||||||||||| || || | |||||||| Sbjct 29292 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAGATTATAAT 29233 Query 115466 ATTCAAAAAGAGTCTACTATACAT 115489 ||||||||||| || ||| | ||| Sbjct 29232 ATTCAAAAAGAATCAACTCTCCAT 29209 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || |||||||| || || ||||| || || | ||| |||||| Sbjct 29640 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 29581 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | ||||| ||| ||| ||| ||||||||||| ||||| ||||| Sbjct 29580 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAA 29521 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | || || |||||||||||||||| || || | || |||||| Sbjct 29520 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAAC 29461 Query 115466 ATTCAAAAAGAGTCTACTATACAT 115489 ||||||||||| || ||| | ||| Sbjct 29460 ATTCAAAAAGAATCCACTCTCCAT 29437 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || ||||| || || || || |||||||||||| | ||| ||||||| Sbjct 29868 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 29809 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| ||||| ||| ||| ||| ||||| ||||| | || ||||| Sbjct 29808 GATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 29749 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | || || |||||||| ||||||| || || | |||||||| Sbjct 29748 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAAT 29689 Query 115466 ATTCAAAAAGAGTCTACTATACAT 115489 ||||||||||| || ||| | ||| Sbjct 29688 ATTCAAAAAGAATCAACTCTCCAT 29665 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| || ||||| || ||||| |||||| | ||| |||||| Sbjct 28956 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 28897 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | ||||| ||| ||| ||| ||||| ||||| | || |||||| Sbjct 28896 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 28837 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | || || |||||||| ||||||| || | | |||||||| Sbjct 28836 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAAT 28777 Query 115466 ATTCAAAAAGAGTCTACTATACAT 115489 ||||||||||| |||||| | ||| Sbjct 28776 ATTCAAAAAGAATCTACTCTCCAT 28753 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| ||||| || ||||| || ||||| ||||| | ||| |||||| Sbjct 29184 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 29125 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | ||||| ||| ||| ||| ||||| ||||| ||||| ||||| Sbjct 29124 GATACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAA 29065 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | || || |||||||| ||||||| | || | | || ||||| Sbjct 29064 CAACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAAT 29005 Query 115466 ATTCAAAAAGAGTCTACTATACAT 115489 |||||||| || || ||| | ||| Sbjct 29004 ATTCAAAAGGAATCAACTCTCCAT 28981 >seq1364 Length=43964 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| || || || || || || ||||| ||||| | ||| |||||| Sbjct 15699 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 15758 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || ||| ||||| ||| || ||| || ||||||||| | ||| |||||| Sbjct 15759 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 15818 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | || | ||| || |||||||| ||||||| ||| || | ||||| || Sbjct 15819 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 15878 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTG 115495 || ||||| ||||| ||| | ||| | ||| Sbjct 15879 ATCCAAAAGGAGTCAACTCTCCATCTCGTG 15908 >seq348 Length=51996 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 115295 TTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGCGACACTGTT 115354 ||||| ||||| || || |||||||| | || | || |||| || || || || || Sbjct 39795 TTTGTGAAAACACTAACTGGAAAAACATTAACATTGGAGACGGCTTCGAGTGATACAATT 39736 Query 115355 GGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTT 115414 | || | ||| || ||| || |||||||| | || |||||| ||| | ||| Sbjct 39735 GACAAACTTAAATGTAAGATTTATGACAAAGAAGGAATTCCTCCTGATCAACAACGCCTT 39676 Query 115415 ATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAAAA 115474 |||| ||| |||| ||||||||||| | ||| || | |||||| | || |||||| Sbjct 39675 ATTTTTGCTGGCACGCAATTAGAAGAAGGACGTACCTTGTCAGATTATTATATCCAAAAA 39616 Query 115475 GAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||| || || ||| | || | ||| | || ||||||| Sbjct 39615 GAGTGCACAATTCATCTTGTACTTAGACTACGTGGAGGAA 39576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425268958153120