Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2123 120 3e-22 seq1364 116 3e-21 seq1318 111 1e-19 seq352 98.7 9e-16 >seq2123 Length=30488 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | || || |||| ||| | || ||||| ||||||||||| ||||| Sbjct 15251 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 15310 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || || || ||||| ||| | || | ||| |||||||| || || Sbjct 15311 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 15370 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| ||| ||||| | | || || | ||| |||| || || | Sbjct 15371 ATTCCTTCTTTGTC-TTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAAC 15429 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | ||| | || || ||||| || ||||| ||||| || ||||||| Sbjct 15430 TTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATGA 15479 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| ||||| | || ||||| |||||||| ||||| || Sbjct 14795 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 14854 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| || || || || ||| | || | ||| ||||| || || || Sbjct 14855 AGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGA 14914 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| | | ||| || | || || | ||||||| ||||| | Sbjct 14915 ATACCTTCTTTGTC-TTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAAC 14973 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| |||||| || ||||||||||| || ||||| ||||| Sbjct 14974 TTCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 15021 >seq1364 Length=43964 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||||| ||||| | ||| | || ||||||||||| || |||||||| | Sbjct 15925 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGAC 15866 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || | || || || || |||| || || ||||| ||||| || Sbjct 15865 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 15806 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCT-GCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| || ||| |||| | || | || | ||||| | |||||| | Sbjct 15805 ATGCCTTCTTTGTCTTGAATCTTC-GCTTTAACTTGGTCAATGGTATCTGAGGACTCTAC 15747 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||||||||| ||||| || |||||||| ||||| Sbjct 15746 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 15699 >seq1318 Length=24839 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| ||||| || || || |||| || || || |||||||| ||||||||| Sbjct 4079 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGA 4020 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | | || || |||| ||| || || || | |||||||| || || ||||| || Sbjct 4019 AAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGG 3960 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||| || ||||| | |||| | || | |||||| | || | Sbjct 3959 GATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAAC 3900 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | |||| ||||||||| || || ||||| || ||||| |||||| Sbjct 3899 TTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATG 3851 >seq352 Length=65406 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||||| || || | ||| | || || || |||||||| || ||||| | Sbjct 29186 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGAC 29245 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||| || || || ||| |||| || || || || || |||||| Sbjct 29246 AACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGG 29305 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || |||||||| || || ||| || | || || | ||||| | |||||||| Sbjct 29306 ATACCTTCTTTATCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACT 29365 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||||||||| || || || |||||||| ||||| Sbjct 29366 TCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 29412 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||||| || || | ||| | || || || ||||||||||| || || | Sbjct 29414 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGAC 29473 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || |||| || || || ||| |||| || || || || || || ||| Sbjct 29474 AATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGG 29533 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||| | | ||||| | | || || | ||||| | |||||| | Sbjct 29534 ATACCTTCTTTATC-TTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTAC 29592 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||||||||| || ||||| |||||||| ||||| Sbjct 29593 TTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 29640 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | ||| | || || || |||||||| || ||||| Sbjct 28730 CCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGAT 28789 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | || || || ||| |||| || || ||||| || ||||| Sbjct 28790 AAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGA 28849 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCT-GCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| | | ||||| | || | || | ||||| | |||||| | Sbjct 28850 ATACCTTCCTTATCT-TGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAAC 28908 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||||||||| || || || |||||||| ||||| Sbjct 28909 TTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 28956 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | ||||| || || | ||| | || || ||||||||||| || || || Sbjct 28958 CCACCTCTTAAACGAAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGAT 29017 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || | || || || ||| |||| || || || || || || ||| Sbjct 29018 AAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGG 29077 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCT-GCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| | | ||||| | || | || | ||||| | |||||||| Sbjct 29078 ATACCTTCCTTATCT-TGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGAC 29136 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||||||||| || || || |||||||| ||||| Sbjct 29137 TTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 29184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471927389283840