Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1330 349 4e-91 seq3144 190 3e-43 seq453 111 2e-19 >seq1330 Length=20794 Score = 349 bits (386), Expect = 4e-91 Identities = 678/991 (68%), Gaps = 20/991 (2%) Strand=Plus/Plus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGT---CCAGGACATTCATCCGGA-CACATCA 63047 ||| || || || |||||||||| ||| | |||||| |||| ||||| || || | Sbjct 17082 TTCAAATTCATCACCCCAAACAT---CCATTAAACCAGGAGCTTCAGCCGGATCAAATAA 17138 Query 63048 ACGACCACTCTCCGTCATCCTTCA-CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63106 || | | | || | | |||| | | ||||||||| ||||| | || |||||| || Sbjct 17139 ACTCCAATTATCATT--TGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTGCA 17196 Query 63107 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63166 ||||| ||| | | | | ||| || ||||| ||||| ||||| | ||| | || Sbjct 17197 TAAAATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAAAA 17256 Query 63167 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63226 | | ||| |||| |||||||| ||| || || || || | | || || ||||||||| Sbjct 17257 TCAAAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGTTT 17316 Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | |||||||| || ||||||||||| | ||||| |||||||| ||| Sbjct 17317 CCTCCTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTCCA 17376 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || || |||||| || || | ||||| ||| | |||||||| ||| ||| Sbjct 17377 TTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGTTC 17436 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| || || ||||| | ||||| || | ||||||| ||| || ||||||||||| Sbjct 17437 ACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGATT 17496 Query 63407 CCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACT 63465 |||||||| |||||| |||| ||||| |||||||| || || | ||| | | | Sbjct 17497 CCCTCTATTGAATCATCTTTCATAGTTAA-AAGAAAACAACTCGAAAGTTGAGGTCTAGG 17555 Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 || || |||||||| || || ||||| ||||||||||| | ||||| || | ||||| Sbjct 17556 TGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGATT 17615 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63585 ||| || |||||||| | || ||||| | ||||| || || || || ||||| | Sbjct 17616 GTAAGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAAG 17675 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 ||| || || || | || | | || |||| || | || ||| |||| | Sbjct 17676 CATATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAAG 17735 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAG 63705 ||||||||| |||||||| || ||| | | |||| || ||||| || || || || Sbjct 17736 AGTTTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAAG 17795 Query 63706 TTTATCCTTATATTTGTTAACTACATCCATGGTAATACTT----GAAATAATAGGAAAAT 63761 ||| ||| | ||||| | ||| || ||| || ||||| || | Sbjct 17796 TTTTTCC---GAATTGTTCATCACA-ATATTATAAGTTTTTTCAGAAATCATTGACGCGC 17851 Query 63762 GTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 63821 ||||||| |||| ||||| | ||| || | | ||| || | || | ||| | || Sbjct 17852 GTTTCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTT 17911 Query 63822 tttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCG 63881 |||| |||||||| || ||||| || || || || | ||| || || | |||||| |||| Sbjct 17912 TTTTAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCG 17971 Query 63882 GATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTG 63941 |||||| || || | || || |||| || |||| | | || ||||| || || Sbjct 17972 GATGTTTAGTCGTCATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGC 18031 Query 63942 TTACACCATTATATATTCCTTGGATAACCTT 63972 | ||||| | ||| | |||| || ||||| Sbjct 18032 TAACACCTTGATAAACTCCTGAAATGACCTT 18062 Score = 109 bits (120), Expect = 7e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 62732 ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCA 62791 ||||||||| |||||| | | |||| ||||| || || || |||| | || | Sbjct 16751 ACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCCGGGCTCGAA 16810 Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 |||| | ||||| || || | ||||||||| ||||| || || | ||||||||||||| Sbjct 16811 TATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTTTGTTGATTA 16870 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911 || ||||| | ||| || || || || |||| ||||| ||||| ||||| ||| Sbjct 16871 GATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCGATCTGGGAT 16930 Query 62912 TCTATAATCGCTTTCCAGAC 62931 || | ||| ||| ||||||| Sbjct 16931 TCAAGAATTGCTGTCCAGAC 16950 >seq3144 Length=5517 Score = 190 bits (210), Expect = 3e-43 Identities = 323/458 (71%), Gaps = 10/458 (2%) Strand=Plus/Minus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||||||||| |||||| || || || |||||||| || ||||| |||||||||| Sbjct 5029 CATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTTG 4970 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATA-AAtttttttAAATC 32475 ||| || ||||| ||||| || ||||| |||||| |||||| | | Sbjct 4969 TAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCA-- 4912 Query 32476 CCAATT--CAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCAT-TTCAC 32532 |||| | || ||| |||||||| || |||||||| |||||| ||||||| | ||| | Sbjct 4911 CCAAGTGCCACTAAT-AATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGC 4853 Query 32533 AATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGA 32592 ||||| || || | |||||||| | || | || | |||||||||||| || | | Sbjct 4852 G-TTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAA 4794 Query 32593 CCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAA-ATGTTTA 32651 |||| || | |||||||| | ||| |||| | ||| | | || || ||| | Sbjct 4793 CCGCTTCCGCTATAATAGCTTCTACAGTTTTTGTTGGAGGTCG-TGCACGAAGATGAGTG 4735 Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 || | | |||||| ||||| || || | || || |||| | ||||| |||||||||| Sbjct 4734 AATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAA 4675 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 32771 || || | ||| ||||| | || | || || | |||||| || ||||| || | |||| Sbjct 4674 AAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCA 4615 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAG 32809 |||||||| |||||||| || || ||||| || | ||| Sbjct 4614 GAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAG 4577 Score = 174 bits (192), Expect = 2e-38 Identities = 217/294 (74%), Gaps = 5/294 (2%) Strand=Plus/Minus Query 32922 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 32981 || || | ||| | ||||||||| || |||||||| ||||| || ||||| || Sbjct 4382 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 4323 Query 32982 ATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCT 33041 || |||||||| || || ||||| || || | ||| || ||||| ||| ||| ||||| Sbjct 4322 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 4263 Query 33042 GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATA 33101 ||||||||||||| || || || || ||| ||||| || ||||| || || ||| Sbjct 4262 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 4203 Query 33102 AAATATTTTTCGTC-TGGTGTTAGTTTA---TTCCAATCATTGATATCTTTAGATATATC 33157 || ||||||| || | || | |||||| | ||||||||| ||||| || || | || Sbjct 4202 AAGAATTTTTCTTCATCGT-TAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTC 4144 Query 33158 CACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 ||||| || || ||||||||||| || || |||||||| ||||| | |||||| Sbjct 4143 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGAT 4090 >seq453 Length=43245 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 63416 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 63475 |||||||| |||| | | || ||| ||||| |||||||| | | || || ||| Sbjct 30221 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 30162 Query 63476 TTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 63535 ||||| || || ||| || |||||||| |||| || || | || ||| || || ||| Sbjct 30161 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 30102 Query 63536 ATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGA 63595 ||||||| || ||||| | ||||||||| | | |||||||| |||||||| || Sbjct 30101 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 30042 Query 63596 GGTCTTTCAAC 63606 ||||||||||| Sbjct 30041 GGTCTTTCAAC 30031 Score = 82.4 bits (90), Expect = 1e-10 Identities = 191/286 (67%), Gaps = 8/286 (3%) Strand=Plus/Minus Query 62600 GGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATA 62659 |||||||||||||| ||| ||||||||||||||| ||||||||||| ||| || Sbjct 31339 GGTCTATGTCTCTTGTTACTTTTTTCAGCTTCTGGAACGGGATAATAATTTTCATCAATG 31280 Query 62660 ATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA- 62718 | |||||| | ||| | | || ||||| | | || | || || | |||||||| Sbjct 31279 ACTTTATTTAAATTCTTTATAACAACTTTAGCAATTTCATGAAGCTTCAAGAAATCAAAA 31220 Query 62719 ----TCGCCCATCTATT-ACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCT 62773 ||| |||| ||||| | |||| || || || | ||||||||||||| Sbjct 31219 GTTTTCGATTTGGTATTAACAAATTTAGGTAATGAAATTGAAGCTAAATTACAAACGGCT 31160 Query 62774 ACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTT 62833 || |||| | | | ||||| | || ||||| || | |||| || | || || Sbjct 31159 ACTTCATCGGGTGCAGTATATTCAACAATTTCAGTACATAAATTAGAGCATGTTATAGTA 31100 Query 62834 CCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAA 62879 || | ||| | ||||||| |||| || || | ||| |||||| Sbjct 31099 CCAAGATTCTTTTGATTAGATTTTTCATTGCAAGAATC--TATAAA 31056 Score = 82.4 bits (90), Expect = 1e-10 Identities = 134/192 (70%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 62189 ACTACTTGAAATTCTCCAGACAATAC---TCTCCGAGTGTAAATATTACTGGTATACGGT 62245 |||||||||||||| ||| ||||| ||| || |||||||| || || || ||| Sbjct 31915 ACTACTTGAAATTCCCCACTTAATACACGTCTTTGA---TAAATATTGCTTGTGTATGGT 31859 Query 62246 TCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACC 62305 || | | ||||| ||||| | ||| ||| || |||||||| ||||| ||||| | | Sbjct 31858 TCAAAGCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATC 31799 Query 62306 AATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAA 62365 || ||| ||||| | || ||| ||||| || ||||| | | |||| | ||| Sbjct 31798 AACAAAGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCAT 31739 Query 62366 AGATCCGACGGT 62377 |||| || ||| Sbjct 31738 CGATCTGAAGGT 31727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633517344289600