Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2123 163 5e-35 seq352 149 1e-30 seq1318 143 5e-29 seq1364 132 9e-26 seq147 93.3 8e-14 seq348 86.0 1e-11 >seq2123 Length=30488 Score = 163 bits (180), Expect = 5e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||||||||| || | ||| | || || || ||||||||||| ||||||||||| || Sbjct 15251 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 15310 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | || || || ||||| || || | ||| ||||| || ||| Sbjct 15311 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGA 15370 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||||||||| ||||| || || || || ||||| | ||||| ||| Sbjct 15371 ATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACT 15430 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || ||||| || ||||| || ||||| || ||||| || Sbjct 15431 TCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATGAT 15480 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | ||||| || || || ||||||||||| || || || || || Sbjct 14795 CCACCACGAAGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAA 14854 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | || || |||||||| ||||| | ||| || || || ||| Sbjct 14855 AGGGTTCGTCCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGA 14914 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||||||||||||||| || || |||||||| || | || || ||| Sbjct 14915 ATACCTTCTTTGTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACT 14974 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||||||||| || || || || || || || ||||| Sbjct 14975 TCCAAAGTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 15021 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | || || ||||| |||||||| || || || ||||| Sbjct 15023 CCGCCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAA 15082 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | || || || ||||| ||||| | ||| ||||| || || Sbjct 15083 AGGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGG 15142 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| |||||||| || | || || |||||||| || | || ||||| Sbjct 15143 ATACCCTCCTTATCTTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACG 15202 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 15203 TCCAAGGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 15249 Score = 113 bits (124), Expect = 8e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || || |||||||||||||||||||| || Sbjct 14567 CCACCACGGAGACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAA 14626 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| || ||||| || ||||| || | | ||| || || || || Sbjct 14627 AGAGTACGACCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGG 14686 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || || || |||||||| || | || || || ||||| || | |||||| || Sbjct 14687 ATCCCCTCTTTATCTTGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACC 14746 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || || || || || || || || || || || ||||| Sbjct 14747 TCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 14793 >seq352 Length=65406 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | ||| | || || || || |||||||| || |||||||| || Sbjct 28730 CCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGAT 28789 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| || || || || ||||| || | | ||| || || || ||| Sbjct 28790 AAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGA 28849 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| |||||||||||||| || || || ||||| || | || || ||| Sbjct 28850 ATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAACT 28909 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| || ||||| || ||||||||||||||||| || ||||| Sbjct 28910 TCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 28956 Score = 145 bits (160), Expect = 1e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || || |||||||| || |||||||| || | || | ||||||||| || || Sbjct 29666 TGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCTTCCAATTGT 29725 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || | | |||||| || || ||||| |||||||| |||||||||||| Sbjct 29726 TTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTT 29785 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || || || || || || || || ||||| | ||| |||||||| || || Sbjct 29786 GCTTTAACTTGATCAATAGTATCATTGGACTCGACTTCAAGGGTAATGGTTTTCCCAGTA 29845 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 ||||||||||||||||| ||||| Sbjct 29846 AGGGTCTTGACGAATATTTGCAT 29868 Score = 136 bits (150), Expect = 7e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || ||||| |||||||| |||||||| || || | ||| | ||||||||||| || Sbjct 29438 TGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCTTCTAATTGT 29497 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || | | |||||| || || || || ||||| || |||||||||||| Sbjct 29498 TTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCTTGAATCTTT 29557 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || || || ||||| || | || |||||||| | ||||| ||||| || || Sbjct 29558 GCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGTTTTACCGGTC 29617 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 || || || ||||| || ||||| Sbjct 29618 AGCGTTTTAACGAAAATTTGCAT 29640 Score = 132 bits (146), Expect = 9e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || || || ||||| || ||||| || || | || | |||||||| || || Sbjct 28982 TGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTGT 29041 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || |||||||| || | | |||||| || || || || |||||||| |||||||||||| Sbjct 29042 TTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTT 29101 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || || || ||||| || | || || ||||| | || || ||||| || ||| Sbjct 29102 GCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTG 29161 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || ||||| Sbjct 29162 AGGGTCTTGACGAAAATTTGCAT 29184 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || || |||||||| || |||||||| || | || | ||||||||||| || Sbjct 29210 TGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCTTCTAATTGT 29269 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || | | |||||| || || || || ||||| || ||||||||||| Sbjct 29270 TTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCTTGAATCTTC 29329 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 | || || || ||||| || | || || ||||| | || || ||||| || ||| Sbjct 29330 GTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTG 29389 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || ||||| Sbjct 29390 AGGGTCTTGACGAAAATTTGCAT 29412 >seq1318 Length=24839 Score = 143 bits (158), Expect = 5e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| | || | ||||||||||| || || |||||||| || || |||||||| Sbjct 4078 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 4019 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 |||| | |||||||||||||| || || || ||||| | | |||||| || || || Sbjct 4018 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 3959 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || ||||| || |||||||| ||| | ||||| |||||||| || ||| ||| || Sbjct 3958 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATC-GCTACTTTCAAC 3900 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||| || || |||||||| || || || || || || || || ||||| Sbjct 3899 TTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCAT 3852 >seq1364 Length=43964 Score = 132 bits (146), Expect = 9e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 68259 TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGC 68318 || || || ||||| |||||||| || ||||| || | || | |||||||| || || Sbjct 15901 TGGAGAGTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGT 15842 Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || ||||| || || | | ||| || || || ||||||||||| |||||||||||||| Sbjct 15841 TTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTC 15782 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 || || || || ||||| |||| || |||||||| | || || ||||| || || Sbjct 15781 GCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTA 15722 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 || ||||| ||||| || ||||| Sbjct 15721 AGAGTCTTAACGAAAATTTGCAT 15699 Score = 109 bits (120), Expect = 1e-18 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 || ||| || || || || || | ||||||||| || || || || ||||| |||||||| Sbjct 16076 TACCTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCTTTGTCTTG 16017 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 |||||||| |||||| || || || || | ||||| ||||| | || || ||||| Sbjct 16016 AATCTTTGTCTTGACTTGTTCAATTGTATCAGAAGATTCAACTTCAAGAGTAATAGTTTT 15957 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| || || |||||||| Sbjct 15956 CCCGGTGAGGGTCTTTACAAAAATCTGCAT 15927 >seq147 Length=125324 Score = 93.3 bits (102), Expect = 8e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 68270 CTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAA 68329 |||||| ||||| |||||||| | || | | |||||||||| || | || || || Sbjct 74557 CTCTTTCTGGATATTATAATCACTCAAGGTACGCTCATCTTCTAATTGACTTCCAGCAAA 74616 Query 68330 TATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGAC-GG 68388 || | | ||| || || ||||| |||||||||||||| ||||| || || | Sbjct 74617 AATAAAACGTTGACTATCAGGGGGAATTCCTTCCTTGTCTTGGATCTTGCATTTAACTAG 74676 Query 68389 CCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGA 68448 || |||||| || | || ||||| |||||||| | |||||||| || || || || | Sbjct 74677 GCT-GATGGTATCAGACGACTCTACCTCCAAGGTTACCGTTTTTCCGGTTAGTGTTTTTA 74735 Query 68449 CGAATATCTGCAT 68461 | |||| |||||| Sbjct 74736 CAAATACCTGCAT 74748 >seq348 Length=51996 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| || || | | ||| | || | ||| ||||||||||||| | |||||| | Sbjct 39576 TTCCTCCACGTAGTCTAAGTACAAGATGAATTGTGCACTCTTTTTGGATATAATAATCTG 39635 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | || | || |||||||| ||| | || || || || || | |||||| || || | Sbjct 39636 ACAAGGTACGTCCTTCTTCTAATTGCGTGCCAGCAAAAATAAGGCGTTGTTGATCAGGAG 39695 Query 68353 GAATGCCTTCCTTGTCTTGAATCTT 68377 |||| ||||| ||||| | |||||| Sbjct 39696 GAATTCCTTCTTTGTCATAAATCTT 39720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921455632426720