Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq352 150 4e-31 seq2123 147 5e-30 seq1318 116 9e-21 seq1364 114 3e-20 seq348 104 6e-17 >seq352 Length=65406 Score = 150 bits (166), Expect = 4e-31 Identities = 163/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||||||||| | ||| ||||||||| || |||||||| | | || || || ||| Sbjct 29429 AGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCT 29488 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTA 288378 ||||||||||| || |||||||||| || ||||| |||| ||||| ||||||||| Sbjct 29489 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTG---ATCTGGGGGGATACCTTCTTTA 29545 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || || ||||| || | ||||| | ||| || |||||||| || ||||| Sbjct 29546 TCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATT 29605 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||| || || ||||| || ||||| Sbjct 29606 GTTTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 29640 Score = 145 bits (160), Expect = 2e-29 Identities = 162/215 (75%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||||||||| | || ||||||||| |||||||| || | | ||| || || ||| Sbjct 29201 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCT 29260 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTA 288378 ||||||||||| || |||||||||| || ||||| |||| ||||| ||||||||| Sbjct 29261 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTG---ATCTGGAGGGATACCTTCTTTA 29317 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || |||| ||| || | ||||| | ||| || || ||||| || || || Sbjct 29318 TCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATT 29377 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||||||||| || ||||| Sbjct 29378 GTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 29412 Score = 136 bits (150), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||||||||| | || ||||||||| |||||||| || | | || || || ||| Sbjct 29657 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCT 29716 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTA 288378 || |||||||| || |||||||| | || ||||| |||| || |||||||| ||| Sbjct 29717 TCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTG---ATCTGGAGGAATTCCTTCCTTA 29773 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || || ||||| || | || |||| ||| | || || ||||| || || || Sbjct 29774 TCTTGAATCTTTGCTTTAACTTGATCAATAGTATCATTGGACTCGACTTCAAGGGTAATG 29833 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || |||||||||||||| ||||| Sbjct 29834 GTTTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 29868 Score = 134 bits (148), Expect = 3e-26 Identities = 160/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 288261 AAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTC 288320 |||||||||||| | || ||| ||||| ||||||||||| | | || || || || Sbjct 28972 AAGTACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATC 29031 Query 288321 TTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTT 288377 ||| |||||||| || |||||||||| || ||||| |||| ||||| ||||| || Sbjct 29032 TTCCAATTGTTTACCGGCGAAGATCAAGCGTTGTTG---ATCTGGGGGGATACCTTCCTT 29088 Query 288378 ATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 ||| || || || ||||| || | ||||| | ||| || || ||||| || || || Sbjct 29089 ATCTTGAATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAAT 29148 Query 288438 CGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||||||||| || ||||| Sbjct 29149 TGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 29184 Score = 132 bits (146), Expect = 1e-25 Identities = 170/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| || || | |||||||||||| | || ||||||||| |||||||| || Sbjct 28727 TGACCACCCCGAAGACGAAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCC 28786 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | | || || || ||||| |||||||| || |||||||||| || || || |||| Sbjct 28787 GATAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTG---ATCT 28843 Query 288364 ---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || || ||||| ||||| || || || ||||| || | ||||| | ||| || Sbjct 28844 GGAGGAATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGAC 28903 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || || || || ||||| || ||||||||||| || ||||| Sbjct 28904 TCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 28956 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||||||||| |||||||| || || || | || |||| ||| ||||| |||||| Sbjct 30187 CCTTCTTTATCTTGGATTTTTGCCTTGACTTGGTCAATAGTATCTGAAGATTCAACTTCG 30246 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| |||||||| ||||| || ||||| Sbjct 30247 AGAGTAATGGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCAT 30290 >seq2123 Length=30488 Score = 147 bits (162), Expect = 5e-30 Identities = 177/238 (74%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| |||| |||||| ||||||| || |||||||| || ||||| || | Sbjct 15251 CCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAA 15310 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | |||||| || ||||| || ||||| || || |||||| Sbjct 15311 AGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGG---TCTGGG 15367 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| || || ||||| ||||| || | || |||| ||| ||||| Sbjct 15368 GGAATTCCTTCTTTGTCTTGAATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCA 15427 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTA-TGTTA 288480 ||||| || ||||| ||||| ||||| || || || ||||| || ||||| | ||||| Sbjct 15428 ACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCATGATTGTTA 15485 Score = 120 bits (132), Expect = 7e-22 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || ||||| |||| || |||||||||||| ||||| || Sbjct 14564 TGACCACCACGGAGACGGAGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCC 14623 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || || || ||||| ||||| || || ||||| |||| ||| || || |||| Sbjct 14624 GAAAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAAATCAAACGTTGCTG---ATCT 14680 Query 288364 ---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 ||||| || |||||||| || ||||| | ||| || | || || | ||| ||| Sbjct 14681 GGAGGGATCCCCTCTTTATCTTGAATTTTGGTTTTAACCTGATCAATGGTATCAGATGAT 14740 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || |||||||| || || || || || || || || ||||| Sbjct 14741 TCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 14793 >seq1318 Length=24839 Score = 116 bits (128), Expect = 9e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| | | |||||| | || | || ||||||||| ||||| || |||| Sbjct 4078 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 4019 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || | ||||| |||||||| ||||| || || || || | ||| |||||| ||| Sbjct 4018 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 3959 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||||||||| || ||||| |||| || || || || | |||||| ||| ||| Sbjct 3958 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 3899 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || || || || || || || || || || || ||||| Sbjct 3898 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCAT 3852 >seq1364 Length=43964 Score = 114 bits (126), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | || || ||||||||||| || || | | || ||||| ||| Sbjct 15910 AGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCT 15851 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || |||||||| || || ||||||| || || || ||| ||| || |||||||| Sbjct 15850 TCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTG---ATCCGGGGGAATGCCTTCTTTG 15794 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || |||||||| || | || || | ||| || |||||||| || || || Sbjct 15793 TCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATA 15734 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| |||||||| ||||| || ||||| Sbjct 15733 GTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 15699 >seq348 Length=51996 Score = 104 bits (114), Expect = 6e-17 Identities = 133/182 (73%), Gaps = 1/182 (1%) Strand=Plus/Plus Query 288238 CATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTA 288297 || |||| ||| || || ||||||||||| |||||||| |||| ||||||||||||| | Sbjct 39570 CAAACAT-TCCTCCACGTAGTCTAAGTACAAGATGAATTGTGCACTCTTTTTGGATATAA 39628 Query 288298 TAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGA 288357 || || | | || ||||| ||||||||||| | || || || || || || |||||| Sbjct 39629 TAATCTGACAAGGTACGTCCTTCTTCTAATTGCGTGCCAGCAAAAATAAGGCGTTGTTGA 39688 Query 288358 GAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTC 288417 | || ||||||||||| || | || || ||| | || || || | ||| ||| Sbjct 39689 TCAGGAGGAATTCCTTCTTTGTCATAAATCTTACATTTAAGTTTGTCAATTGTATCACTC 39748 Query 288418 GA 288419 || Sbjct 39749 GA 39750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179435605074728