Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq23 84.2 3e-11 >seq23 Length=114346 Score = 84.2 bits (92), Expect = 3e-11 Identities = 146/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 172799 TTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAAAGACCAGCAACT 172858 |||||||| || ||||| || || || | ||||||||||| | ||||| || |||||| Sbjct 22157 TTCCCACGAAGCGGGAAAACTCCATAATTGTCACGACCAACTATAGAAAATCCGGCAACT 22216 Query 172859 GCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACA--CTTTCCAGATTGTG 172916 || | | ||| || ||||| || || || | ||| | ||||| ||| || || | Sbjct 22217 GCCAAAGCCTTTGCAGAATCGCCTTCAGTAAGGATTAAAGTACAATCTTGACATTTTTTA 22276 Query 172917 CCGTCCCCGCCTTGTTCGCATCGTCCAACTTGGGAATACCAGTAATTTTGGACTTG-CGG 172975 ||| || || || || ||||| |||| || | |||||| | ||| | || || | Sbjct 22277 CCG--CCGGCATTATTTGCATCATCCAGTTTAGCAATACCCATGATTCT--ACCTGTCTT 22332 Query 172976 GC-ACCATCTGTCTTCTTGAGTTCCTT 173001 | |||||| || ||||| |||||||| Sbjct 22333 TCTACCATCGGTTTTCTTTAGTTCCTT 22359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597245508866080