Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2123 100 3e-16 seq1318 87.8 2e-12 >seq2123 Length=30488 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || |||||||||||||| || | || || || | || || || || ||||||||||| Sbjct 15059 TCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAA 15118 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| || |||||||| | || | | |||||| | | ||| |||| |||| | | Sbjct 15119 ATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTAT-CTTGAATTTTGGTTTTTACTTG 15177 Query 42138 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || || || || || || | |||||||||||||| || || |||||||| Sbjct 15178 GTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGGTGAGTGTCTTTAC 15237 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 15238 GAAGATTTGCAT 15249 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||||||| | ||| ||| |||||||||||||| |||| || || || | Sbjct 14806 ACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCC 14865 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || || || ||||| ||||| ||||| || ||||| || | || | | || || Sbjct 14866 ATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTT 14925 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 || | ||| | |||| ||| | | | || ||| || || || || | || | Sbjct 14926 GT-CTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAA 14984 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| || ||||| || || ||||| |||||||| Sbjct 14985 TGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 15021 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| |||||||| || ||||| | || || || |||| || || || || |||||||| Sbjct 15286 CTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAA 15345 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || || |||||||| | || | | || ||||| ||| |||||| || | | | Sbjct 15346 AATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCT-TGAATTTTTGCTTTAACTT 15404 Query 42137 CGCCACC-GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | || |||||| ||||| || || | ||||| || || || || || || || | Sbjct 15405 GGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAA 15464 Query 42196 CAAAGATTTGCAT 42208 | ||||||||||| Sbjct 15465 CGAAGATTTGCAT 15477 >seq1318 Length=24839 Score = 87.8 bits (96), Expect = 2e-12 Identities = 163/238 (68%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 41974 TTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 42033 |||| || || || | |||||| | ||||| || ||||| || ||||||||||||| Sbjct 4085 TTTACCG-CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGT 4027 Query 42034 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 42093 |||| | || | || | || |||| ||| |||||||| ||||| | || || || | Sbjct 4026 AATCGGAAAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGAT 3967 Query 42094 CGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCG 42153 | | || | | || || || ||||||| ||||| | | | || ||||| Sbjct 3966 CCGGGGGGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTAC 3907 Query 42154 ATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||| || || | || |||||||| || || || || || ||||| |||||||| || Sbjct 3906 TTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTT 3849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543114505643840