Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2123 149 6e-31 seq1364 102 8e-17 seq1318 102 8e-17 seq352 98.7 1e-15 seq348 89.7 5e-13 seq1330 84.2 2e-11 >seq2123 Length=30488 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | || ||| |||||||||| || || |||||||||||||| ||||||| Sbjct 15250 ACCTCCGCGAAGTCGAAGTACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGA 15309 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || |||||||||| || ||||| || |||| || || |||||||| || || Sbjct 15310 AAGGGTACGACCGTCTTCAAGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGG 15369 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||||||| ||||| | |||||||||| || || | || || | || | Sbjct 15370 AATTCCTTCTTTGTCTTG-AATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAA 15428 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| | || | ||||| ||||| | ||||| ||||| |||||||| Sbjct 15429 CTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTTTAACGAAGATTTGCAT 15477 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | ||||| || || ||||||||||| ||||| || | | ||| || | || Sbjct 14809 AAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATC 14868 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||| || || ||||| ||||||| || ||||| || || ||||| |||||||| || Sbjct 14869 CTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTC 14928 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || ||| ||||| || | ||||| | || ||||| | ||| | ||| Sbjct 14929 TTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGT 14988 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | |||||| || ||||||||||| Sbjct 14989 TTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 15021 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | || || ||||||| || |||||||||||||| ||||| || | Sbjct 15022 ACCGCCACGAAGACGGAGAACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGA 15081 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | || ||||| || || || || ||||||| || |||||||| || || Sbjct 15082 AAGGGTTCGTCCATCCTCAAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGG 15141 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || ||||| ||||| ||||| || | ||||| || || || Sbjct 15142 GATACCCTCCTTATCTTGAATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTAC 15201 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| |||||||| | || |||||||| |||||||| Sbjct 15202 GTCCAAGGTGATGGTTTTGCCGGTGAGTGTCTTTACGAAGATTTGCAT 15249 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || ||||||||||| ||||| ||||| | | || || | ||| Sbjct 14582 AGGACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCT 14641 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| || || |||| | || ||||| || ||||| || || ||||| ||| Sbjct 14642 TCCAATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATCCCCTCTTTATCT 14701 Query 64352 TGTATTTTTTGCTTTACAACC---TCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 || | ||||| ||| |||| || | |||||| | || || || | || | Sbjct 14702 TGAA--TTTTGGTTT-TAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATC 14758 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || || | |||||||| ||||||||||| Sbjct 14759 GTCTTACCAGTAAGTGTTTTTACAAAAATTTGCAT 14793 >seq1364 Length=43964 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || ||||| || |||||||||| | ||| || | ||| Sbjct 15910 AGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCT 15851 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || |||||| | || | || ||||| || || ||||| |||||||| ||| Sbjct 15850 TCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCT 15791 Query 64352 TGTATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || |||||| | || | ||||| || || ||||| | ||| | || Sbjct 15790 TGAATCTTC-GCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGT 15732 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | ||| || |||||||||||||| Sbjct 15731 TTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 15699 >seq1318 Length=24839 Score = 102 bits (112), Expect = 8e-17 Identities = 165/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| || | ||| || | || | || |||||||||||||| |||||||| | Sbjct 4078 CCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAA 4019 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | | || | ||||| | ||| || || ||| | || | || || || || || || Sbjct 4018 AGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGG 3959 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||||||||| ||||| ||||||| || || || | ||||| | || ||| Sbjct 3958 ATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACT 3899 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT-TTTAATAA 64451 |||| ||| | ||| || || || | ||||| || ||||||||||| ||||| || Sbjct 3898 TCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTTAAAAA 3843 >seq352 Length=65406 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||||||||||||||| || |||| | || || | ||| Sbjct 29429 AGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCT 29488 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || || || | || | || || || || || || || |||||||| ||| Sbjct 29489 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCT 29548 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | |||||||| || || | |||||| || || ||||| | ||| | || Sbjct 29549 TG-AATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGT 29607 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||||| ||||| |||||||||||||| Sbjct 29608 TTTACCGGTCAGCGTTTTAACGAAAATTTGCAT 29640 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || |||||||||||||| || ||||||| | || ||| | ||| Sbjct 29657 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCT 29716 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || || || | || | || || || || |||||||||||||| || ||| Sbjct 29717 TCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCT 29776 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | |||||||| || || | |||||| || || ||||| | || | ||| Sbjct 29777 TG-AATCTTTGCTTTAACTTGATCAATAGTATCATTGGACTCGACTTCAAGGGTAATGGT 29835 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | || || ||||| |||||||| Sbjct 29836 TTTCCCAGTAAGGGTCTTGACGAATATTTGCAT 29868 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || |||||||||||||| || ||||| | | || || | || Sbjct 28744 AAGTACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGACCATC 28803 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| | || || || || | || | || ||||| || |||||||| ||||| || || Sbjct 28804 TTCCAATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATC 28863 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | |||||||| || || | |||||| || || ||||| | || | | Sbjct 28864 TTG-AATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTG 28922 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || ||||| | || || |||||||||||||| Sbjct 28923 TTTTACCGGTGAGGGTCTTGACGAAAATTTGCAT 28956 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || |||||||||||||| || ||||||| | || || | ||| Sbjct 29201 AGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCT 29260 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || || || | || | || || || || ||||| || |||||||| ||| Sbjct 29261 TCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCT 29320 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||||| || | |||||| || || ||||| | ||| | || Sbjct 29321 TGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTT 29380 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | || || |||||||||||||| Sbjct 29381 TTACCGGTGAGGGTCTTGACGAAAATTTGCAT 29412 >seq348 Length=51996 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | |||||| || |||||||| || | |||||||| || | ||||||| Sbjct 39578 CCTCCACGTAGTCTAAGTACAAGATGAATTGTGCACTCTTTTTGGATATAATAATCTGAC 39637 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| || | ||||| | ||| |||| ||| |||| || || || || || |||||| Sbjct 39638 AAGGTACGTCCTTCTTCTAATTGCGTGCCAGCAAAAATAAGGCGTTGTTGATCAGGAGGA 39697 Query 64337 ATTCCTTCTTTTTC 64350 ||||||||||| || Sbjct 39698 ATTCCTTCTTTGTC 39711 >seq1330 Length=20794 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 154590 GCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCACAAA 154649 |||||||| || || |||| ||| || | || |||| ||||| |||| |||||| Sbjct 16775 GCCAAGTTACATACAGCAACTTCATCCGGGCTCGAATATTCAACAATCTCTGTACACAAA 16834 Query 154650 TTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCTTTG 154709 ||||| ||| || || || || |||| ||||| ||||| || || | |||||| Sbjct 16835 TTACTACATTTGATTGTACCAAGATTTTGTTGATTAGATTTACGATTACAAGAATCTTTG 16894 Query 154710 TACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTG 154755 || | || || || || |||||||| | |||| ||||| ||||| Sbjct 16895 TAGAGCATATATGGTGTACCCGTTTCGATCTGGGATTCAAGAATTG 16940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499554389273440