Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1318 150 1e-31 seq2123 107 1e-18 seq352 102 6e-17 >seq1318 Length=24839 Score = 150 bits (166), Expect = 1e-31 Identities = 184/248 (74%), Gaps = 5/248 (2%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| || || | | || || || | || || |||||||| || ||||||||| Sbjct 4079 GCCACCGCGTAAACGAAGTACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCG-- 4022 Query 15009 GAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 || | | || | |||||||| ||||| ||||| |||| ||||| ||||| || Sbjct 4021 GAAAGTGAACGTCCATCTTCTAACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGG 3962 Query 15067 GGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 || |||||||| || || |||||| ||| || | || || ||||||||| |||| Sbjct 3961 GGGATTCCTTCTTTATCTTGAATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCA 3902 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATA 15186 || ||||| |||||||||||||| || || ||||| |||||||||||||| ||| ||| | Sbjct 3901 ACTTCTAAAGTAATGGTTTTACCAGTAAGTGTTTTAACAAAAATTTGCATGTTT-AAAAA 3843 Query 15187 AATTTTTT 15194 ||||| || Sbjct 3842 AATTTATT 3835 >seq2123 Length=30488 Score = 107 bits (118), Expect = 1e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || |||||||| ||||| ||||| ||| | | | ||||| ||||| Sbjct 14591 TGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGC 14650 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | |||||||| || || || || || || || || || ||||||| Sbjct 14651 TTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATCCCCTCTTTATCTTGAATTTTG 14710 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 |||| || || || ||||| ||| || || | |||||| || ||||| || Sbjct 14711 GTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTA 14770 Query 15154 AGAGTTTTTACAAAAATTTGCATA 15177 || ||||||||||||||||||||| Sbjct 14771 AGTGTTTTTACAAAAATTTGCATA 14794 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| || || |||||||| || ||||| || || ||| | || || Sbjct 14813 ACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCA 14872 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | |||||| || ||| | || | ||| || || || ||||| ||||| ||||| | Sbjct 14873 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGA 14932 Query 15088 AT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||||||||| || || || |||||| | || || || || ||||||||||| Sbjct 14933 ATCTTTGCTTTT-ACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTT 14991 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || |||||||| ||||||||||||||| Sbjct 14992 TCCAGTTAGAGTTTTAACAAAAATTTGCATA 15022 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 |||| |||||| || || |||||||| ||||| ||||| || | | ||||||| Sbjct 15269 ACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCA 15328 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||||||||||| | || | ||| || ||||| ||||||||||| ||||| | Sbjct 15329 AGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGA 15388 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| ||| || || ||||| ||| | ||| || || | ||| || || || Sbjct 15389 ATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTT 15448 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || || |||||||| Sbjct 15449 CCGGTAAGGGTTTTAACGAAGATTTGCAT 15477 >seq352 Length=65406 Score = 102 bits (112), Expect = 6e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| || || || |||||||| ||||| || || || Sbjct 29414 CCACCTCTTAAACGGAGTACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTC--TG 29471 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | |||||||||||||| |||||| | ||||| || ||||| || | Sbjct 29472 ACAATGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGG 29531 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 | || ||||| || || ||| ||||| ||| || ||||| ||||| ||| Sbjct 29532 GGATACCTTCTTTATCTTGAATCTTTGC-TTTAACTTGGTCTATGGTATCAGAGGACTCT 29590 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || | || || |||||||| ||||| ||||| || |||||||||||| Sbjct 29591 ACTTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTAACGAAAATTTGCATA 29641 Score = 102 bits (112), Expect = 6e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| || || || |||||||| || || ||||| || Sbjct 29642 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATC--TG 29699 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || | | | | ||||| |||||||| |||||| | || || || ||||| || | Sbjct 29700 ACAAAGTACGCCCATCTTCCAATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAG 29759 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 ||||||||||||| || ||| ||||| ||| || || |||||||| | || Sbjct 29760 GAATTCCTTCCTTATCTTGAATCTTTGC-TTTAACTTGATCAATAGTATCATTGGACTCG 29818 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || | |||||||||||| || || || || || || || ||||||||| Sbjct 29819 ACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCTTGACGAATATTTGCATA 29869 Score = 95.1 bits (104), Expect = 9e-15 Identities = 146/206 (71%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || ||||| |||||||| || || ||||| | | | | | ||||| ||||| Sbjct 28753 ATGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTG 28812 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 ||| |||||| | ||||| || || || || ||||| |||||||| || ||| || Sbjct 28813 TTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTT 28872 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 |||||| || ||||| ||||| || || || | |||||| |||||||| | Sbjct 28873 TGCTTTA-ACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGG 28931 Query 15152 TCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || || |||||||||||| Sbjct 28932 TGAGGGTCTTGACGAAAATTTGCATA 28957 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| || || || |||||||| || || ||||| || Sbjct 29186 CCACCTCTTAAACGGAGTACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATC--TG 29243 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | |||||||||||||| |||||| | ||||| || ||||| || | Sbjct 29244 ACAACGTACGACCATCTTCTAATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAG 29303 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||| || || ||| || ||||||| ||||| ||||| || | Sbjct 29304 GGATACCTTCTTTATCTTGAATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGA 29363 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||||| |||||||| || || || || || |||||||||||| Sbjct 29364 CTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACGAAAATTTGCATA 29413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357328946669660