Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2123 84.2 2e-11 seq1364 84.2 2e-11 >seq2123 Length=30488 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/221 (69%), Gaps = 10/221 (5%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| ||| | ||| ||| ||||| ||||||||||| || || || || | Sbjct 14806 ACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCC 14865 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || || || || |||||||| || | || ||||| || | || | | || || Sbjct 14866 ATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTT 14925 Query 46498 GTCCATGATCTT--CTT---CTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACC 46552 ||| ||||| ||| ||||| || | || ||| || || || |||| Sbjct 14926 GTCTTGAATCTTTGCTTTTACTTGATCG-----ATGGTATCGGAAGACTCAACTTCCAAA 14980 Query 46553 GTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||||||| || || || ||||||||||| |||||||| Sbjct 14981 GTAATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 15021 >seq1364 Length=43964 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||||||||| | ||| ||||| | || |||||||||||||||||| || || Sbjct 15925 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGAC 15866 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || | || || ||||| || |||||||| ||||| || | || Sbjct 15865 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 15806 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545 | || || ||||| |||||| ||| | | | | | | || || || || || Sbjct 15805 ATGCCTTCTTTGTCTTGAATCTTC-GCTTTAACTTGGTCAATGGTATCTGAGGACTCTAC 15747 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | || || ||||| || || || || ||||| || |||||||| Sbjct 15746 TTCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 15699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565136120111520