Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1230 181 1e-40 >seq1230 Length=26237 Score = 181 bits (200), Expect = 1e-40 Identities = 326/470 (69%), Gaps = 16/470 (3%) Strand=Plus/Plus Query 159273 TGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTA 159332 || ||| ||||| |||||| ||| || |||||||| ||| | ||| | || || || || Sbjct 7361 TGTTATAACAGGATTTGATGGTATTTCTTTACAACCAAACTCTGGAGCTCAAGGAGAATA 7420 Query 159333 TGCAGGACTGTTA-GCA--ATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAA 159389 | ||||| ||| | | || |||||||||| || | || |||||||| | || Sbjct 7421 TACAGGA---TTACGTATTATTGGAGCATACCATAAATCAAAGGGTGATGATAAGCGTAA 7477 Query 159390 TGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGG 159449 ||| ||||| || || | ||||| ||||| || ||||| ||||| || | ||||||||| Sbjct 7478 TGTTTGTTTAATTCCTGTATCAGCTCATGGTACAAATCCCGCATCTGCTGCGATGGCAGG 7537 Query 159450 GATGAAAGTTGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGA 159509 ||| |||||||| ||| || ||||| || |||| | | || || |||||| | || Sbjct 7538 TATGGAAGTTGTACCTGTTAAATGTGAAAATAATGGTGATCTTGATATGAAAGATTTGGA 7597 Query 159510 GAAGAAAGCAATCA----TGAATACATTTGAACTGTCATGTATTATGATTACATATCCAT 159565 | || || | || | || ||| | | | | | | ||| |||| ||||||| Sbjct 7598 AGAAAAGGCTACCAAATTTAAAGACAGATTAGCAGC----TTTCATGGTTACTTATCCAT 7653 Query 159566 CTACACATGGTGTATTTGAAA-CAAACATCAGACAGATATGTAAGATTGTTCATGAGAAT 159624 | ||| |||||||||||||| | | | | || |||| | || ||||| | ||| Sbjct 7654 CAACATTTGGTGTATTTGAAAGCGGAGTTGTAAAAG-CATGTGAAATAATTCATCAAAAT 7712 Query 159625 GGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCA 159684 || || || || ||| | ||||| |||||| |||||||||| | || || | |||| Sbjct 7713 GGAGGACAAGTTTATATGGATGGAGCAAATTTAAATGCACAAATTGGATTATGTACACCA 7772 Query 159685 TGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTG 159734 || | || || ||||| |||||| | || ||||||| |||||||| Sbjct 7773 GCTGGCATAGGAGCTGATGTTTGTCATTTGAATCTACATAAAACATTCTG 7822 Score = 118 bits (130), Expect = 1e-21 Identities = 200/290 (69%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 158407 GGTGAGTGGGGATTTGACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 158466 || || ||||| ||| ||||||||||| | || || | |||||| ||||| | || Sbjct 6338 GGAGAATGGGGTGCTGATATTGCTGTAGGCAATAGTCAGCGCTTTGGTGTTCCTTTAGGT 6397 Query 158467 TACGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCT 158526 || || || || ||||| ||||| ||||| | |||| | |||| ||| || || Sbjct 6398 TATGGTGGCCCGCATGCCGCATTTTTTGCTTGCAAAGACCAACTTAAGCGAAGAATGCCA 6457 Query 158527 GGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTA 158586 || || | || || || ||| || |||||||| || | || | || Sbjct 6458 GGTCGATTAGTTGGGGTCTCGCGGGATGCATCTGGAAATAAAGCTTATCGTTTGTCGTTA 6517 Query 158587 CAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAA 158646 || || ||||| || ||||| ||| |||| ||||| || ||||| || || || |||||| Sbjct 6518 CAAACCAGAGAACAACATATTAGACGAGAGAAAGCTACTAGTAATATATGTACTGCACAA 6577 Query 158647 GCACTGCTGGCTAATATGTCTGGGTTCTATGCAGCATATCATGGTGCAGA 158696 ||||| ||||||||||| ||| | ||||| ||||||||| |||| Sbjct 6578 GCACTCTTGGCTAATATGGCTGCTATGTATGCTATATATCATGGACCAGA 6627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587944792135360