Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2123 179 8e-40 seq1318 140 7e-28 seq352 136 9e-27 seq1364 132 1e-25 seq642 100 6e-16 seq348 93.3 9e-14 seq1345 84.2 5e-11 >seq2123 Length=30488 Score = 179 bits (198), Expect = 8e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || |||||||| |||||||||||||| || ||||| | ||| || | || ||||| Sbjct 15269 ACTAGATGAAGAGTTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCA 15328 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || ||||| ||||| ||||| |||||||| ||||| ||||||||||||||| Sbjct 15329 AGTTGTTTGCCAGCGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGA 15388 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 |||||| || || | ||||| ||||| ||| ||| ||||||||||| | |||||| Sbjct 15389 ATTTTTGCTTTAACTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTT 15448 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||| | |||||| Sbjct 15449 CCGGTAAGGGTTTTAACGAAGATTTGCAT 15477 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||| || |||||||| || || ||||| | |||||| | |||||||| Sbjct 14585 ACGAGGTGAAGAGTTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCC 14644 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||||| ||||| || | ||||| || |||||||| || || ||||| |||||| Sbjct 14645 AATTGCTTACCAGCGAAAATCAAACGTTGCTGATCTGGAGGGATCCCCTCTTTATCTTGA 14704 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| || || | |||||||| || || ||| || |||||||||| |||||| Sbjct 14705 ATTTTGGTTTTAACCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTA 14764 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||||| || | |||||| Sbjct 14765 CCAGTAAGTGTTTTTACAAAAATTTGCAT 14793 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 ||||| || |||||||||||||||||||| || | ||| |||| ||||| || || || Sbjct 14819 TGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCAAGTTGT 14878 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| ||||| || || ||||| || ||||| ||||| ||||||||||||||||| ||| Sbjct 14879 TTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGAATCTTT 14938 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || | || ||||| || ||| || ||||| | |||| || ||||| || Sbjct 14939 GCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTTTCCAGTT 14998 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | |||||| || || | |||||| Sbjct 14999 AGAGTTTTAACAAAAATTTGCAT 15021 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || ||||||||||| ||||||||||||||||| |||| ||| |||| ||||| || Sbjct 15040 AACGAGATGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTC 15099 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || || ||||| ||||| || || ||||| |||||||| || || || || || ||||| Sbjct 15100 AAGTTGTTTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTG 15159 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| || || | || ||||| ||||| || || || | ||| | || || Sbjct 15160 AATTTTGGTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTT 15219 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || |||||||| | |||||| Sbjct 15220 GCCGGTGAGTGTCTTTACGAAGATTTGCAT 15249 >seq1318 Length=24839 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || |||||||||||||||||||||| ||| | | |||||||| | ||| ||||| Sbjct 4048 GTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCTAACTGTTTACCA 3989 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | |||||||| || || || || |||||||| ||||||||||||| ||| Sbjct 3988 GCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGAATTTTTTCTTTG 3929 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || || ||||| || |||||| ||||| | |||| || || || || | ||| Sbjct 3928 ACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTACCAGTAAGTGTT 3869 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 3868 TTAACAAAAATTTGCAT 3852 >seq352 Length=65406 Score = 136 bits (150), Expect = 9e-27 Identities = 158/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| || |||||||||||||| ||||| | | ||| | ||||||||| Sbjct 29660 ACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCTTCC 29719 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || ||||| |||||||| | |||||||| ||||||||||| ||||| || |||||| Sbjct 29720 AATTGTTTACCAGCGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGA 29779 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTC--CGAACTTTCCACTTCAAGGGTAACCGTCT 195109 || ||| || || | ||||| || || | || || ||||||||||||| || | Sbjct 29780 ATCTTTGCTTTAACTTGATCAATAGTATCATTGGAC--TCGACTTCAAGGGTAATGGTTT 29837 Query 195110 TTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || | || || ||||| | |||||| Sbjct 29838 TCCCAGTAAGGGTCTTGACGAATATTTGCAT 29868 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| || |||||||||||||| ||||| | | ||| | |||||||| Sbjct 28748 ACGAGATGGAGAGTAGATTCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCC 28807 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || ||||| |||||||| | ||||| || ||||||||||| ||||| || |||||| Sbjct 28808 AATTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGA 28867 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| || || | || ||||| || || || ||||||||||||| || || Sbjct 28868 ATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTA 28927 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 28928 CCGGTGAGGGTCTTGACGAAAATTTGCAT 28956 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| || |||||||||||||| ||||| | | || | |||||||| Sbjct 29204 ACGAGATGGAGAGTTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCTTCT 29263 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || ||||| |||||||| | |||||||| |||||||| || |||||||| |||||| Sbjct 29264 AATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCTTGA 29323 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || || | || ||||| || || || |||||||| |||| || || Sbjct 29324 ATCTTCGTTTTTACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTA 29383 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 29384 CCGGTGAGGGTCTTGACGAAAATTTGCAT 29412 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || |||||||| ||||||||||| || || || | | || | |||||||| Sbjct 29432 ACGAGATGGAGAGTGGATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCTTCT 29491 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || ||||| |||||||| | |||||||| ||||| || || |||||||| |||||| Sbjct 29492 AATTGTTTACCAGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCTTGA 29551 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| || || | || ||||| || || || |||||||| || | || || Sbjct 29552 ATCTTTGCTTTAACTTGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGTTTTA 29611 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| ||||| ||||| | |||||| Sbjct 29612 CCGGTCAGCGTTTTAACGAAAATTTGCAT 29640 Score = 116 bits (128), Expect = 8e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| || || ||||||||||| || || | | ||| | |||||||| Sbjct 28976 ACGAGATGGAGAGTTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCC 29035 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | || ||||| |||||||| | |||||||| ||||| || || ||||| || |||||| Sbjct 29036 AATTGTTTACCGGCGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGA 29095 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| || || | || ||||| || || || |||||||| |||| || || Sbjct 29096 ATCTTTGCTTTAACTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTA 29155 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 29156 CCGGTGAGGGTCTTGACGAAAATTTGCAT 29184 >seq1364 Length=43964 Score = 132 bits (146), Expect = 1e-25 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 || || || ||||| ||||| ||||| ||||||||||| | |||| || | |||||||| Sbjct 15907 ACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGACAAG-GTACGTCCATCTTC 15849 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | || ||||| || ||||| | ||||| || || || |||||||||||||||||||| Sbjct 15848 CAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTG 15789 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || || || | |||||||| || || || |||||||| |||| || || Sbjct 15788 AATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTT 15729 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || ||||| | |||||| Sbjct 15728 ACCGGTAAGAGTCTTAACGAAAATTTGCAT 15699 Score = 111 bits (122), Expect = 3e-19 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||||||||| ||||||||||| ||||| || |||| | ||| | |||||||| Sbjct 15680 AACAAGGTGAAGAGTTGACTCTTTTTGGATATTATAGTCGGACAAAGTACGTCCATCTTC 15621 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||||| ||||| |||||||| | ||||| || ||||||||||| ||| Sbjct 15620 CAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGATCTGGAGGAATACCT 15572 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 194994 CTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053 ||| || || || || || | || |||||| |||||||| || ||||||||||||||||| Sbjct 16073 CTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGAGGGATACCTTCTTTGTCTTGAAT 16014 Query 195054 TTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||| |||||| | ||||| || || ||| ||| |||||||| |||| || || || Sbjct 16013 CTTTGTCTTGACTTGTTCAATTGTATCAGAAGATTCAACTTCAAGAGTAATAGTTTTCCC 15954 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || ||||| || | ||||| Sbjct 15953 GGTGAGGGTCTTTACAAAAATCTGCAT 15927 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 195034 ATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACT 195093 || |||||||||||||| ||||| ||||| | ||||||||||| ||| ||| ||| Sbjct 15490 ATACCTTCTTTGTCTTGGATTTTGCCTTTGACTTGGTCAATGGTGTCAGAAGATTCAACT 15431 Query 195094 TCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || | ||||| || || | ||| |||||||| | |||||| Sbjct 15430 TCAAGAGTGATAGTCTTGCCGGTAAGAGTCTTTACGAAGATTTGCAT 15384 >seq642 Length=35260 Score = 100 bits (110), Expect = 6e-16 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||| | ||||| || | || ||||||| ||||||||| ||||| | | |||| | Sbjct 6655 AGTCTAAGTACAAGATGCAACGTAGACTCTTCTTGAATATTATAATCTGATAAAGTTTTT 6596 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || | |||||||| || || |||| ||||| ||||| ||||||||||||||| Sbjct 6595 CCATCCTCCAATTGCTTACCAGCAAAAATAATACGTTGCTGGTCAGGAGGAATGCCTTCT 6536 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTCAAGG 195099 || | | | || || | | ||||| ||||| ||| || | || ||| Sbjct 6535 TTTTTCTCGACCTTAGATTTAATCATATCAATAGTGTCGCTTGAA---TCAAAATCTAGG 6479 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 |||| || ||||| ||||| ||||| || || Sbjct 6478 ATAACTGTTTTTCCGGTCAATGTTTTCACAAA 6447 >seq348 Length=51996 Score = 93.3 bits (102), Expect = 9e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCT 194981 ||||| | ||||| |||| ||| |||||||||| |||| ||||| | |||| || | Sbjct 39587 AGTCTAAGTACAAGATGAATTGTGCACTCTTTTTGGATATAATAATCTGACAAG-GTACG 39645 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 || ||||| | ||| | || || || ||||| |||||||| || |||||||| ||||| Sbjct 39646 TCCTTCTTCTAATTGCGTGCCAGCAAAAATAAGGCGTTGTTGATCAGGAGGAATTCCTTC 39705 Query 195042 TTTGTCTTGAATTTT 195056 |||||| | ||| || Sbjct 39706 TTTGTCATAAATCTT 39720 >seq1345 Length=25233 Score = 84.2 bits (92), Expect = 5e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 194959 ATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGT 195018 ||||||||||| | ||| | |||||||| || |||||||| || || || | || | Sbjct 19599 ATATTGTAATCACTTAAAGTACGGCCATCTTCAAGTTGCTTACCAGCAAAAATTAATCTT 19540 Query 195019 TGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTG 195078 ||||| ||||| || || |||||||| || ||||||| || | | ||||| || Sbjct 19539 TGTTGATCTGGTGGTATACCTTCTTTTTCAGTAATTTTTGTTTTTAATTGATCAATTGTA 19480 Query 195079 TCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACAC 195134 || | || ||||||| || | || ||||| || || ||||| ||| |||| Sbjct 19479 TCACTAAACTCGACTTCAATTGTTAGAGTTTTTCCAGTTAATGTTTTAACGTACAC 19424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109275820287092