Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2123 113 3e-20 seq352 82.4 5e-11 >seq2123 Length=30488 Score = 113 bits (124), Expect = 3e-20 Identities = 155/215 (72%), Gaps = 10/215 (5%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| ||| ||||| ||||| || ||||| |||||| ||||| |||| || Sbjct 14813 ACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCA 14872 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || ||||| ||||| || || || |||||||| ||| | || | || || ||||| | Sbjct 14873 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGA 14932 Query 34893 ATCTT--CTGTT---TGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| || || ||| |||| ||||| || ||||| || | || |||| Sbjct 14933 ATCTTTGCTTTTACTTGATCGATGGTATCGGAAGAC-----TCAACTTCCAAAGTAATGG 14987 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||||| || ||||| || ||||| || |||||| Sbjct 14988 TTTTTCCAGTTAGAGTTTTAACAAAAATTTGCATA 15022 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 34779 TGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGT 34838 |||| ||| |||||| ||||| || ||||| |||||| ||||| |||| || || ||| Sbjct 15047 TGAAGAGTGGATTCTTTTTGAATATTGTAGTCGGAAAGGGTTCGTCCATCCTCAAGTTGT 15106 Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 || || || || || || |||||||||||| | || | |||||||| || ||| || Sbjct 15107 TTACCAGCGAAAATGAGACGTTGCTGGTCTGGGGGGATACCCTCCTTATCTTGAATTTTG 15166 Query 34899 TGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTG 34958 ||| || | || | || || ||| || || | ||| |||||||| || ||| Sbjct 15167 GTTTTTACTTGGTCGATGGTATCCGAGGACTCTACGTCCAAGGTGATGGTTTTGCCGGTG 15226 Query 34959 AGAGTCTTCACAAAGATCTGCATA 34982 || ||||| || ||||| |||||| Sbjct 15227 AGTGTCTTTACGAAGATTTGCATA 15250 >seq352 Length=65406 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| || ||||| ||||||||||| | | || |||| |||| ||||| ||||| || Sbjct 28993 TTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAA 29052 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC-GG 34908 || | ||||| || ||| | || | || ||||| || |||||| ||| || | Sbjct 29053 GATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTG 29112 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || |||| | ||| || ||| || || | || || ||||| || ||||| ||||| | Sbjct 29113 AT-CTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGA 29171 Query 34969 CAAAGATCTGCATA 34982 | || || |||||| Sbjct 29172 CGAAAATTTGCATA 29185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324576326111328