Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1330 351 1e-91 seq3144 277 2e-69 seq453 123 3e-23 >seq1330 Length=20794 Score = 351 bits (388), Expect = 1e-91 Identities = 676/991 (68%), Gaps = 37/991 (4%) Strand=Plus/Plus Query 48119 TAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA-CACA 48177 ||||||| ||||||||| || | |||| ||| |||||| |||| ||| || | Sbjct 17078 TAACTTC--AAATTCATCACCCCAAACATCCATTAAACCAGGAGCTTCAGCCGGATCAAA 17135 Query 48178 TCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAG 48237 | || ||||| |||| || || || ||||||| | ||| | | |||||| | Sbjct 17136 TAAACT-CCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGTG 17194 Query 48238 CTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAA 48297 | ||||||||||| | | | |||||| || ||| |||| |||| | || | || Sbjct 17195 CATAAAATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATAA 17254 Query 48298 AGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTAT 48357 | || | || |||| |||||| | ||||||||| || || | | || || ||||| | Sbjct 17255 AATCAAAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTGT 17314 Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417 | ||||||||||| | |||||| |||||||| |||||||| | |||||| || | ||| | Sbjct 17315 TTCCTCCTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATTC 17374 Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTG 48477 ||||||| |||||| ||||| | ||||||| ||| | || | || ||| ||| Sbjct 17375 CATTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATGT 17434 Query 48478 AAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAA 48537 | ||| ||||||||||| | ||||| || | || || ||| | |||||||| | Sbjct 17435 TCACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAAGTATCATAGA 17494 Query 48538 TTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGAC 48597 |||| ||||| ||||||| ||||| |||| ||||||||||| || | ||| || | Sbjct 17495 TTCCCTCTATTGAATCATCTTTCATAGTTAAAAGAAAACAACTCGAAAGTTGAGGTCTAG 17554 Query 48598 AAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATT 48657 || || | |||||| || || |||||||| ||| |||| | || ||||| | || | Sbjct 17555 GTGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTAAAGAACTTTTCTGACATCAGAT 17614 Query 48658 TATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTA 48717 | || ||||||||| ||| || ||||| | || || || | | ||| ||||| | Sbjct 17615 TGTAAGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCGCATAA 17674 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCA 48777 ||||| ||| || | || ||| ||| | |||| |||||||| ||| |||| | Sbjct 17675 GCATATGTTGGGGACGCTCGGCAACTTTTCCACCTATTCGTAAAAGATAAGATCTTTCAA 17734 Query 48778 ATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATTTA 48837 |||||||| |||||||| || ||| | | || |||||| ||| || | ||||| | Sbjct 17735 GAGTTTTAAATCCAAAATAATTATATTTATAATCTCTATCATAAATGATCGTAGAATTAA 17794 Query 48838 TTCTTTCCTTA-TGTTTATATACTACATCCATTACATTTTT-TGATATAATTGA------ 48889 | ||||| | |||| || || | || || | ||||| || || ||||| Sbjct 17795 GTTTTTCCGAATTGTTCAT-CACAATAT-TATAAGTTTTTTCAGAAATCATTGACGCGCG 17852 Query 48890 -TTCC--------------------TTGTAAAGATCTTCTACAACATCACTAAATAtttt 48928 |||| || ||||||||||| ||||||| ||| | ||| Sbjct 17853 TTTCCCTGTTTTCGGATTTATATAATTATAAAGATCTTCAACAACATTGGAAAAAACTTT 17912 Query 48929 ttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGG 48988 ||| |||||||||||||||||||| | || || | |||||| | | ||||| || || Sbjct 17913 TTTAGTTTCTTTATGAAGATTAGAAACAGCAATACGAGCAGCAAGGACGGCATAGTCCGG 17972 Query 48989 ATGAATTGTTGTACATGTAC-TAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTAG 49047 ||| | || || ||| ||| | ||||||| || || |||||||||| ||| Sbjct 17973 ATGTTTAGTCGT-CATATACGCGGCCGTTTCTGCAGCCAAATTATCTAATTCAACAGTGC 18031 Query 49048 TTACACCTGTATATATTCCTTGAATAACTTT 49078 | |||||| ||| | |||| ||| || || Sbjct 18032 TAACACCTTGATAAACTCCTGAAATGACCTT 18062 Score = 149 bits (164), Expect = 7e-31 Identities = 228/329 (69%), Gaps = 0/329 (0%) Strand=Plus/Plus Query 47315 AGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATA 47374 ||| ||||||||||||||||| |||| || || | || || || || || ||||| Sbjct 16053 AGGGTTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATA 16112 Query 47375 TGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGC 47434 ||||| | | |||||||| || || ||||| | ||| ||||| |||||||| | ||| Sbjct 16113 AGGTTCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGC 16172 Query 47435 AACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATC 47494 | ||||| ||||| ||| |||| || | ||| | |||||||| Sbjct 16173 GAGCAATAATGAATTTCGTACACCATGTTCTGATATTTTTTGTTTCAACAAATTCCAATC 16232 Query 47495 CCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGG 47554 ||| | ||| | || |||||||||| | ||| ||||| | ||| ||||| | ||| Sbjct 16233 CCATAAATCAGTAGGCTCAACATTCCACATATCGTATTGTAAAATGCCTTTGGAAACCGG 16292 Query 47555 AGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAA 47614 || || | ||| | | ||| || ||| || || | |||||||| |||||| || Sbjct 16293 TGATCCTTGATACGACTCATACGGGCCGAATTTTTGTGATAGTTCACATGATGCTTCTAA 16352 Query 47615 TGCACTATAATATATTGTTTCAAATATTT 47643 ||||| || ||| ||||| |||||||||| Sbjct 16353 TGCACCATGATACATTGTCTCAAATATTT 16381 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 47058 TAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGAT 47117 || ||||||||||||||||| || | | | | ||||| | |||||||||||||||| | Sbjct 15717 TACAAATGCATACTAGTTAACTTTGCTTTAGTCGGTTCCGCAATATGAATATTAAGACTT 15776 Query 47118 TGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGT 47177 ||| ||||||||||| ||||| | ||| || |||||||| | |||||| |||| | | Sbjct 15777 TGAGATTGATCAATAAAAGCACCACGATCGGCCGCCATATCAATAATAACTTTTTGCGAT 15836 Query 47178 ATCTCCCATACTGTTTTATA 47197 || |||||| |||||||| Sbjct 15837 ATTTCCCATGTAGTTTTATA 15856 Score = 102 bits (112), Expect = 9e-17 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 47856 TTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTT 47915 |||||| ||||||| | | ||||||| || | ||||||||||| || |||| Sbjct 16742 TTATTTTCAACAAACATGGGCAATGCTATACTAGCCAAGTTACATACAGCAACTTCATCC 16801 Query 47916 GGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTT 47975 || | | ||||| | || || | ||| | ||||| ||||||||| ||||| | |||| Sbjct 16802 GGGCTCGAATATTCAACAATCTCTGTACACAAATTACTACATTTGATTGTACCAAGATTT 16861 Query 47976 TGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCT 48035 || |||||| ||||| | || ||||| |||||| | ||||| || ||||| Sbjct 16862 TGTTGATTAGATTTACGATTACAAGAATCTTTGTAGAGCATATATGGTGTACCCGTTTCG 16921 Query 48036 ATCTGAGATTCAATGATAGATTTCCAAAC 48064 ||||| ||||||| || | | |||| || Sbjct 16922 ATCTGGGATTCAAGAATTGCTGTCCAGAC 16950 >seq3144 Length=5517 Score = 277 bits (306), Expect = 2e-69 Identities = 374/518 (72%), Gaps = 6/518 (1%) Strand=Plus/Minus Query 18656 TCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCT 18715 |||| ||||| ||||||||| || | || | ||||||||||||||| ||||| || | Sbjct 5030 TCATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTACCTT 4971 Query 18716 CTAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATC 18775 ||| || | |||||||||||||| ||||| | | |||||| | |||| | Sbjct 4970 GTAAACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTGCTCCAC 4911 Query 18776 CTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAAT 18835 | | | | | || || |||||| |||||||||| ||||||| | ||||| | || | Sbjct 4910 CAAGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAATTCGCGT 4851 Query 18836 TCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTG 18895 |||| || ||||| ||||| |||| ||| ||||| | ||||||||||||||| | || | Sbjct 4850 TCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATTGTAACCG 4791 Query 18896 CCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGG--GTATA-GAAGATGTTTAA 18952 | || | |||||||| | | || | || | ||||| || | ||||||| | | Sbjct 4790 CTTCCGCTATAATAGCTTCTAC---AGTTTTTGTTGGAGGTCGTGCACGAAGATGAGTGA 4734 Query 18953 ACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAA 19012 | | | |||||||||||||||||| | ||| || |||| | || | ||| || |||| Sbjct 4733 ATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTCGTTGGAAA 4674 Query 19013 ATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAG 19072 | ||||| || ||||||| ||||||||| |||||||| || || || || || | ||||| Sbjct 4673 AAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAAAGCTCCAG 4614 Query 19073 AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCAT 19132 |||||||||| ||||| || || ||||| || || || | ||| || | || || | Sbjct 4613 AAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAATGAAGATTCCT 4554 Query 19133 TATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTT 19170 ||| ||||||| || |||||||| || || ||| Sbjct 4553 TATCGGAAATCCATCGAAGAGCCCAATCCGCTTTTTTT 4516 Score = 192 bits (212), Expect = 7e-44 Identities = 230/306 (75%), Gaps = 6/306 (2%) Strand=Plus/Minus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 || || | ||| | ||| ||||| | ||||||||||||||| |||||||| || Sbjct 4382 TCCTTGATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATG 4323 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 ||||||||||| ||||||||||||||||||| || || |||||| ||| ||| | ||| Sbjct 4322 ATCTGAAATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCC 4263 Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 || ||||||||||| || || ||||| || ||||| || || || || || |||| Sbjct 4262 ACTAAATTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATA 4203 Query 19405 A--AATGTTT-TTCATC-TGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATC 19460 | ||| ||| |||||| | | ||| || | ||||||||| ||||| || || | || Sbjct 4202 AAGAATTTTTCTTCATCGTTAAGTTTAT-ACTCCCAATCATTCATATCCTTGGAAAGGTC 4144 Query 19461 TACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATAT-CAC 19519 ||||| ||||| |||||||| ||||| || || ||||| ||||| | ||| || | ||| Sbjct 4143 AACTTCCTCAACAGTCCAAAATGAAGCTTCGGCCTTTTTGTACATTTGCCAGATCTACAC 4084 Query 19520 GATATT 19525 ||||| Sbjct 4083 AATATT 4078 >seq453 Length=43245 Score = 123 bits (136), Expect = 3e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48549 CTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAA 48608 ||||||||| |||| | | || ||| || || |||||||| || || || | | Sbjct 30221 CTATCATCTTTCATTTGCACTAAAAAGCAGCTTGACATTTGTGGTCTTGGTGTACCAGCA 30162 Query 48609 TTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCA 48668 ||||| || |||||| ||||||| |||| ||||||| || | || ||||| |||||| Sbjct 30161 TTAAACAAAGTTGGACTTGCATGAGTAAAATATTTCTCGGACATTAAATTATAAGTTTCA 30102 Query 48669 ATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGA 48728 ||| | | ||| ||||| | ||| || || ||||| |||||||| ||||| | ||| Sbjct 30101 ATAGCTGCATCAATATCATAACCATGAATTCCAATAGAAACACGCATCAACATGTGTTGT 30042 Query 48729 GGTCTTTCAACAA 48741 ||||||||||||| Sbjct 30041 GGTCTTTCAACAA 30029 Score = 102 bits (112), Expect = 9e-17 Identities = 244/369 (66%), Gaps = 18/369 (5%) Strand=Plus/Minus Query 47327 TTGAAATTCTCCAGATAGTACTCTACGGCT---ATATATATTACTTGTATATGGTTCTAT 47383 ||||||||| ||| || ||| ||| || ||| ||||| ||||| |||||||| | Sbjct 31910 TTGAAATTCCCCACTTAATAC---ACGTCTTTGATAAATATTGCTTGTGTATGGTTCAAA 31854 Query 47384 AGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAA 47443 ||||||| ||||||| ||| ||| || ||||| || ||||| | ||||| || || Sbjct 31853 GCATTCATTGTTTCCAAGAATCTGACTCGTAGATGCAGTGGGCATCGGTGCAATCAACAA 31794 Query 47444 GCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATC 47503 |||||||||||||||| |||| | ||| ||||| |||| Sbjct 31793 AGAGTTTCTTACTCCATATTGACTGATCTTTTCTTTCAACTCTGCCCAGTCCCATCGATC 31734 Query 47504 TGA---TGGAACAACATT---CCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGA 47557 ||| | | || | | ||| || || || ||||| || |||||||| ||||| || Sbjct 31733 TGAAGGTTGTACTCCTGTTCCCCACAATTCGTAATGAAGGATACCTTTACTAATCGGGGA 31674 Query 47558 ACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCA---A 47614 ||| | |||||| |||||||| | | ||| | |||||| || ||| | | Sbjct 31673 ACCCTCATATGTAGGGTAAGGACCATCTTTAGCAGCAATTTCACATGATGATTCAAGAGA 31614 Query 47615 TGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTCTGATGATTC 47674 ||| || ||||| |||||||| || | | ||| || || | ||||| ||||| Sbjct 31613 TGC---ATGATATAAAGTTTCAAAAATATCTCGGTTAAGCTTACGCGCTTCATCAGATTC 31557 Query 47675 AAAAGGATA 47683 | ||||| Sbjct 31556 CCATGGATA 31548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562007086412640