Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq3144 208 9e-49 >seq3144 Length=5517 Score = 208 bits (230), Expect = 9e-49 Identities = 352/502 (70%), Gaps = 16/502 (3%) Strand=Plus/Minus Query 36868 TATTCATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTC 36927 || |||||||||| ||||||||| ||| || ||| |||| || |||||||| || | Sbjct 5033 TACTCATAACTCCAGCTTTTTGATAATCTGATACGCGTTTTTCAAAGAAATTTGTTTTAC 4974 Query 36928 CTTCTAGTGATATATTT---TCCATAAAATCAAATGGATTAGATGTATTATATA-TAGTA 36983 ||| || | || || |||||||||||||| ||||| || |||||| | | | Sbjct 4973 CTTGTA---AACTAATTAAATCCATAAAATCAAAAGGATTCTCTGAATTATACAATTTTG 4917 Query 36984 CTACATGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGT 37043 || || | | | || | | ||||| || |||||||| || ||||| ||||| Sbjct 4916 CTCCACCA-AGTGCCACTAATAATCTATCAGCTACAAATTCAATATATTTTTTCATTAAA 4858 Query 37044 TCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATT 37103 | ||| |||||||||| || ||||| | ||| ||| | |||| || ||||||| Sbjct 4857 TTCGCGTTCATACCAATTAAATTAACTGGTAATGCTTCTGTTAAAAATTCTTGTTCTATT 4798 Query 37104 ATTACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTA--AAT 37161 | || || || ||||| || | || || ||||| || | | | || Sbjct 4797 GTAACCGCTTCCG---CTATAATAGCTTCTACAGTTTTTGTTGGAGG-TCGTGCACGAAG 4742 Query 37162 ATT--TAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTC 37219 || | || || | |||||||||||||||||| || |||||||||| | || | ||| Sbjct 4741 ATGAGTGAATAAGAGACATGCAAAATCACAATGCAATCCTTCATCTCGAGAAATTAGTTC 4682 Query 37220 ATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAA 37279 || ||||| |||||||||||||| | |||||||| || | |||||| |||| || || Sbjct 4681 GTTGGAAAAAGTTAATCCTGGCATCATTCCTCTTTTCTTTAACCAAAAGATTGACGCGAA 4622 Query 37280 AGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGT 37339 || |||||||||||| || |||||||| || ||||| |||||||||||| | | || | Sbjct 4621 AGCTCCAGAAAAGAATATTCCTTCAACAGCGGCAAACGCTACAAGACGTTCAGCAAATGA 4562 Query 37340 TGAACTATAATCAGAAATCCAT 37361 || | ||| ||||||||| Sbjct 4561 AGATTCCTTATCGGAAATCCAT 4540 Score = 118 bits (130), Expect = 1e-21 Identities = 180/255 (71%), Gaps = 5/255 (2%) Strand=Plus/Minus Query 37446 ATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGA 37505 ||||||| |||||| | | |||||||| || || |||||||| || |||||| Sbjct 4376 ATATAAGAATCAATCAAGAGGGAGTACATTTCTGAATGGATATTTTCGATCATGATCTGA 4317 Query 37506 AAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAG 37565 || ||||||||||| || ||||| | | ||| || || ||| ||| | | |||| Sbjct 4316 AATCCATAAAAACATCTTGCTTCTGGAATTTGGACTTCATTACTAAAACGTTCCACTAAA 4257 Query 37566 TTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGT 37625 |||||||| || || ||||| || |||||||| || | ||| | ||||| | Sbjct 4256 TTTTCATTGACAATACCATCCGAGGCGGCAAAGAAGGCCAAAACGTGAGAAATAAAGAAT 4197 Query 37626 CTTTCATCATTTGATAATTTT----TTCCAATCATTAATATCTTTTGATAAATCAACTTC 37681 |||| ||| | | ||| ||| | ||||||||| ||||| || || | |||||||| Sbjct 4196 TTTTCTTCA-TCGTTAAGTTTATACTCCCAATCATTCATATCCTTGGAAAGGTCAACTTC 4138 Query 37682 ATCAACGGTCCAAAA 37696 ||||| |||||||| Sbjct 4137 CTCAACAGTCCAAAA 4123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592209620275040