Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2123 127 2e-24 seq1364 98.7 8e-16 seq352 84.2 2e-11 >seq2123 Length=30488 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || |||||||||||||||||| ||||| || |||| Sbjct 14804 AGACGAAGCACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGT 14863 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || |||||||| || || || || || ||||| | ||||| || || Sbjct 14864 CCATCCTCAAGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCT 14923 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| |||||| | | | | || || | ||| || |||| ||| Sbjct 14924 TTGTCTTGAATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTA 14983 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || | |||||| |||||||| ||||| Sbjct 14984 ATGGTTTTTCCAGTTAGAGTTTTAACAAAAATTTGCAT 15021 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||| || || ||||| || ||| | ||| | || ||||| |||||||| || || Sbjct 14603 TCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCAGCGAAA 14662 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTA-CAGA 48694 |||| || || ||||| | || | ||||| || || ||| ||| |||||| | Sbjct 14663 ATCAAACGTTGCTGATCTGGAGGGATCCCCTCTTTATCTTGAAT-TTTGGTTTTAACCTG 14721 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || | || ||||| | |||||||| || || || | |||||||| Sbjct 14722 ATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTTTTAC 14781 Query 48755 AAAAATCTGCAT 48766 |||||| ||||| Sbjct 14782 AAAAATTTGCAT 14793 >seq1364 Length=43964 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| || | ||| | ||| || || ||| ||||| ||||||||||| || Sbjct 15925 CCACCTCTTAAACGGAGCACGAGATGGAGAGTTGACTCCTTTTGGATATTGTAATCTGAC 15866 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || ||||| || ||||||||||| |||| || || ||||||| |||| Sbjct 15865 AAGGTACGTCCATCTTCCAATTGTTTACCGGCAAAGATCAAGCGTTGCTGATCCGGGGGA 15806 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| || ||||| |||||| ||| || | | | ||||| | ||| || Sbjct 15805 ATGCCTTCTTTGTCTTGAATCTTCGCTTTAACTTGGTCAATGGTATCTGAGGACTCTACT 15746 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| ||||| || || | ||| || || ||||| ||||| Sbjct 15745 TCAAGAGTAATAGTTTTACCGGTAAGAGTCTTAACGAAAATTTGCAT 15699 >seq352 Length=65406 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||| ||||| |||| | | ||| | || ||||| || ||||| || || Sbjct 28766 TCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTGTTTACCAGCGAAG 28825 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || || ||||| | |||| || ||||| || ||||||| ||| || Sbjct 28826 ATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGG 28885 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||| || || | ||||| ||||| || || | || || || Sbjct 28886 TCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTGACG 28945 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 28946 AAAATTTGCAT 28956 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||||||||| || || |||| | | || | || ||||| || |||||||| || Sbjct 28994 TCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAG 29053 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || |||||||| | ||| | || ||||| || ||||||| ||| || | Sbjct 29054 ATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAACTTGA 29113 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||| || || | ||||| ||||| || || | || || || Sbjct 29114 TCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGGGTCTTGACG 29173 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 29174 AAAATTTGCAT 29184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380870392607748