Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1330 179 2e-40 >seq1330 Length=20794 Score = 179 bits (198), Expect = 2e-40 Identities = 434/648 (67%), Gaps = 17/648 (3%) Strand=Plus/Plus Query 25898 AATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATT 25957 |||||| ||||| | ||||| ||||| | | |||||| | ||| | || ||| | | Sbjct 17134 AATAAACTCCAATTATCATTTGATTCAACCCTTTTCATAAAAAGATCCGAAACCCAAAGT 17193 Query 25958 GCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAG 26017 |||||||||||||| | || | | |||||||||||| ||| ||||||| ||| | Sbjct 17194 GCATAAAATAAATCCCGTGCACGAACTTCTTCTTTTCCAGTATTTTTTTTTAAATCCATA 17253 Query 26018 AAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTT 26077 ||||||||||| || | ||||| | ||||||||| |||||||| || | ||| Sbjct 17254 AAATCAAAAATGTCAGGATGCCACGTTTCTAAATAAATAGCAAACGCGCCCGGACGTTTG 17313 Query 26078 CCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAAT 26137 ||| |||||||| || ||||| ||||| | ||| |||| ||||| |||| | | Sbjct 17314 TTTCCTCCTTGATCAACATATCTAGCAGTATTATTATAAACGCGTAACATGGGAATAATT 17373 Query 26138 CCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCA 26197 ||| ||||| | || ||||| | | ||| | |||||||||| | ||| | ||| Sbjct 17374 CCATTTGAATAACCATTTGTTCCAGCAATATAAGATCCTGTCGCACGAATGTTATGAATG 17433 Query 26198 TGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA--ATCTGAAACTGTATCGA 26255 | | ||| || ||||| || || ||||| ||| || | | ||| ||||| Sbjct 17434 TTCACACCAATACCACCTGCAGTCTTAGAAATCATTGCGCATGTTTTCAAA--GTATCAT 17491 Query 26256 AAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAAT 26315 | ||||| | ||| |||| ||||||| ||| | ||||||| || | ||| | Sbjct 17492 AGATTCCCTCTATTGAATCATCTTTCATAGTTAAAAGAAAACAACTCGAAAGTTGAGGTC 17551 Query 26316 GAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATCCTTCACTCAAAG 26375 || ||| || | |||||| || ||||| | || |||||| || | ||| || | | Sbjct 17552 TAGGTGTGCCAGCATTAAACAAAGTCGGAGATGCGTGAGTA-AAGA-ACTTTTCTGACAT 17609 Query 26376 CTG--TATAAGTTTCAAGAACTTCATCGATATTGTAATTACTAACTTCAATAGCT--GTT 26431 | | | |||||||||| | | | ||||||| | || ||| ||| | Sbjct 17610 CAGATTGTAAGTTTCAATAGCAGCTTCGATATCATCTCCGTGAATCCCAACCGCTACGCG 17669 Query 26432 CTTAACCACATATATTGAGGTCGTTCAATTACATTATTTTCCGCAT-CTCTAATCAAATA 26490 | ||| ||||| ||| || || || || |||||| | | || | | ||| Sbjct 17670 CATAA--GCATATGTTGGGGACGCTCGGCAAC----TTTTCCACCTATTCGTAAAAGATA 17723 Query 26491 AGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGATTGAAATCTCT 26538 |||| |||| | |||||| ||||||||||||| || || ||||||| Sbjct 17724 AGATCTTTCAAGAGTTTTAAATCCAAAATAATTATATTTATAATCTCT 17771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252995357101700