Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1318 152 5e-32 seq352 143 2e-29 seq1364 141 8e-29 seq2123 136 4e-27 seq1330 123 2e-23 seq1360 96.9 3e-15 >seq1318 Length=24839 Score = 152 bits (168), Expect = 5e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| ||||||| || || |||||||| ||||| | ||||| ||| | | Sbjct 3852 ATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGC 3911 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| |||| || ||||| ||||||||||| || || |||||| Sbjct 3912 GATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGATCAA 3971 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTATAA 24882 |||||||| || ||||| || |||||| | || || | || || | || ||||| || Sbjct 3972 CAACGTTTAATATTTGCTGGTAAACAGTTAGAAGA-TGGACGTTCACTTTCCGATTACAA 4030 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGG 24933 |||||||| ||||| ||| |||||||||| | || || ||||| ||||| Sbjct 4031 TATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGGCGG 4081 >seq352 Length=65406 Score = 143 bits (158), Expect = 2e-29 Identities = 157/206 (76%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||||||||| ||||||||||| || || || |||||||| || | Sbjct 29640 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 29581 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||| || ||| |||||| ||||| |||||||| || || || |||||| Sbjct 29580 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAA 29521 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACAT-GTCAGATTAT 24880 ||||| |||||||| || || ||||| | || ||| ||| |||| |||||| ||| Sbjct 29520 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGT---ACATTGTCAGACTAT 29464 Query 24881 AACATTCAAAAGGAATCGACACTACA 24906 ||||||||||| ||||| || || || Sbjct 29463 AACATTCAAAAAGAATCCACTCTCCA 29438 Score = 132 bits (146), Expect = 4e-26 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||||||||| ||||| || ||||| || || | Sbjct 29412 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 29353 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||| |||||| ||||| ||||| |||||||| || ||||| |||||| Sbjct 29352 GATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAA 29293 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| || || ||||| | || ||| | | ||||||||||||| Sbjct 29292 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAGATTATAAT 29233 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 |||||||| ||||| || || || Sbjct 29232 ATTCAAAAAGAATCAACTCTCCA 29210 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||||||||| ||||| || ||||| || || | Sbjct 29184 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 29125 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||| || ||| |||||| ||||| || ||||| || || || |||||| Sbjct 29124 GATACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAA 29065 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| ||||| ||||| |||| ||| | | | || || ||||| Sbjct 29064 CAACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAAT 29005 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 |||||||||||||| || || || Sbjct 29004 ATTCAAAAGGAATCAACTCTCCA 28982 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || || || ||||| ||||| || ||||| || ||| Sbjct 29868 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 29809 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || || ||| |||||| ||||| || |||||||| ||||| |||||| Sbjct 29808 GATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 29749 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| || ||||| || || ||||| |||| ||| | | | ||||||||||||| Sbjct 29748 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAAT 29689 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 |||||||| ||||| || || || Sbjct 29688 ATTCAAAAAGAATCAACTCTCCA 29666 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||||||||| ||||| || ||||| || || | Sbjct 28956 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 28897 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||| || ||| |||||| ||||| || ||||| || ||||| ||||| Sbjct 28896 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 28837 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||| || || ||||| |||| ||| | | | || |||||||| Sbjct 28836 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAAT 28777 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 |||||||| ||||| || || || Sbjct 28776 ATTCAAAAAGAATCTACTCTCCA 28754 >seq1364 Length=43964 Score = 141 bits (156), Expect = 8e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || |||| || || ||||||||||||||||| || |||||||| || | Sbjct 15699 ATGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA 15758 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || || ||| ||||| |||||||||||||| || || || ||||| Sbjct 15759 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 15818 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| |||||||||||||| ||||| |||| ||| | | | |||||||||| || Sbjct 15819 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 15878 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || |||||||| || || || || Sbjct 15879 ATCCAAAAGGAGTCAACTCTCCA 15901 Score = 116 bits (128), Expect = 3e-21 Identities = 114/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || ||||| ||||||||||| || ||||| ||| | | Sbjct 15927 ATGCAGATTTTTGTAAAGACCCTCACCGGGAAAACTATTACTCTTGAAGTTGAATCTTCT 15986 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | ||| || || |||||| |||||||||||||| || ||||| |||||| Sbjct 15987 GATACAATTGAACAAGTCAAGACAAAGATTCAAGACAAAGAAGGTATCCCTCCAGATCAA 16046 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAG 24850 ||| | ||||| ||||| || |||||| Sbjct 16047 CAAAGATTGATTTTTGCTGGCAAACAG 16073 >seq2123 Length=30488 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| ||||||| ||||| || ||||| ||||| | ||||| || | || Sbjct 15021 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 14962 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || |||||| |||||| |||||||||||||| || || || ||||| Sbjct 14961 GATACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 14902 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | || || ||||| ||||| || |||||| ||| | | || || || || Sbjct 14901 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 14842 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 |||||||| || || ||||| || |||||| Sbjct 14841 ATTCAAAAAGAGTCAACACTTCATTTGGTG 14812 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| ||||||| || ||||| || || || || || ||||| ||| | || Sbjct 15477 ATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAGTTGAATCTTCC 15418 Query 24764 GACACAGTAGAA-ACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | | |||| ||||| || ||||||||||||||||| || || || || Sbjct 15417 GACACTATTGACCAAGTTAAAGCAAAA-ATTCAAGACAAAGAAGGAATTCCCCCAGACCA 15359 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| | || || || || ||||| || || || | | | | ||||||||||| Sbjct 15358 GCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTTCAGATTATAA 15299 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||| || || || || || | || | ||| | |||||||| Sbjct 15298 CATTCAAAAAGAGTCAACTCTTCATCTAGTACTTCGACTTCGCGGAGG 15251 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| || || ||||| || ||||| || || || ||| | | Sbjct 14793 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 14734 Query 24764 GACACAGTAGAAACGGT-AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || ||| ||||| ||| || ||||| ||||| || || ||||| ||||| Sbjct 14733 GATACCATTGATCAGGTTAAAACCAAA-ATTCAAGATAAAGAGGGGATCCCTCCAGATCA 14675 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||||||||||| || || || || || |||| ||| | | | || |||||||| Sbjct 14674 GCAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAA 14615 Query 24883 CATTCAAAAGGAATCGACACTACAC 24907 ||| ||||| ||||| || || ||| Sbjct 14614 CATCCAAAAAGAATCAACTCTTCAC 14590 >seq1330 Length=20794 Score = 123 bits (136), Expect = 2e-23 Identities = 114/142 (80%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 139092 GTTGCACACCGCCACTTCGTCGGGG-TCGCTGTATTCGACAATTTCGGCACACAAATTAC 139150 ||| || || || ||||| || ||| ||| ||||| ||||| || | ||||||||||| Sbjct 16780 GTTACATACAGCAACTTCATCCGGGCTCGAA-TATTCAACAATCTCTGTACACAAATTAC 16838 Query 139151 TACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAA 139210 |||| ||||| ||||| | |||||||||||| ||| || ||||||| ||||||||| | Sbjct 16839 TACATTTGATTGTACCAAGATTTTGTTGATTAGATTTACGATTACAAGAATCTTTGTAGA 16898 Query 139211 GCATATACGGTGTGCCAGTTTC 139232 ||||||| ||||| || ||||| Sbjct 16899 GCATATATGGTGTACCCGTTTC 16920 >seq1360 Length=52185 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 || || || ||| ||||||| ||| || ||||| ||| | | ||||| || ||| | Sbjct 42111 ATACAAATTTTTGTTAAAACTGTAAGTGGCAAAACAATTGCCATTGAAGTTGATGCCTCT 42170 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||||| || || ||| | | || ||||| |||||||| | ||||| |||| Sbjct 42171 GATACAGTTAAAGAAGTGAAAAACATAATTCAAGATAAAGAAGGCACTCCTCCAAATCAG 42230 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 ||||||||||||||||| || ||||| ||||| ||| Sbjct 42231 CAACGTTTGATCTTTGCTGGTAAACAACTGGAAGAT 42266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449816191029280