Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq352 150 3e-31 seq1318 125 1e-23 seq1364 122 1e-22 seq1345 114 2e-20 seq1506 109 9e-19 seq9491 102 1e-16 seq2123 102 1e-16 seq1360 93.3 7e-14 seq642 91.5 2e-13 >seq352 Length=65406 Score = 150 bits (166), Expect = 3e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || |||||||||||| |||| || || | Sbjct 29411 TGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTG 29352 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | ||||||| || || ||| ||||||||| || || || ||||||| Sbjct 29351 ATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAAC 29292 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || |||||||||||||| ||| | | ||||| |||||||||||| Sbjct 29291 AACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAGATTATAATA 29232 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| ||||| | ||| | || |||||||| |||| Sbjct 29231 TTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTA 29184 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | || || | || || ||||| ||||| |||| || || || | Sbjct 29867 TGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAATG 29808 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | | || ||| || || ||| ||| ||||| ||||| || ||||||| Sbjct 29807 ATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAAC 29748 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || ||||||||||| || ||| | || || |||||||||||| Sbjct 29747 AACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAGATTATAATA 29688 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| ||||| | ||| | || |||||||| |||| Sbjct 29687 TTCAAAAAGAATCAACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTA 29640 Score = 132 bits (146), Expect = 8e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || |||||||| ||| |||| ||||| | Sbjct 29639 TGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCTG 29580 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | || ||| || || ||| ||||||||| || || || ||||||| Sbjct 29579 ATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAAC 29520 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || |||||||||||||| ||| | | || || |||| ||||| | Sbjct 29519 AACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAGACTATAACA 29460 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| ||||| | ||| | || |||||||| |||| Sbjct 29459 TTCAAAAAGAATCCACTCTCCATCTCGTACTCCGTTTAAGAGGTGGTA 29412 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || |||||||||||| |||| || || | Sbjct 29183 TGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCTG 29124 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | || ||| || || ||| ||| ||||| || || || ||||||| Sbjct 29123 ATACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAAC 29064 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || ||||||||||| || ||| | || ||| | || ||||||| Sbjct 29063 AACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAATA 29004 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| ||||| ||| ||||| | ||| | || |||||||| |||| Sbjct 29003 TTCAAAAGGAATCAACTCTCCATCTCGTACTTCGTTTAAGAGGTGGTA 28956 Score = 107 bits (118), Expect = 3e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || || ||||||||||| |||| || || | Sbjct 28955 TGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCTG 28896 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | || ||| || || ||| ||| ||||| ||||| || ||||| | Sbjct 28895 ATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAGC 28836 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || ||||||||||| || ||| | | || ||| | |||||||||| Sbjct 28835 AACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAATA 28776 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATA 146263 | ||||||||||| ||| ||||| | ||| | || | | || ||| |||| Sbjct 28775 TTCAAAAAGAATCTACTCTCCATCTCGTACTTCGTCTTCGGGGTGGTCAATA 28724 >seq1318 Length=24839 Score = 125 bits (138), Expect = 1e-23 Identities = 166/230 (72%), Gaps = 8/230 (3%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | |||||| | || || ||||| |||||| | || || ||| || || Sbjct 3853 TGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGTAGCG 3912 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || || ||| | ||||| ||| ||||||||| || || || ||||||| Sbjct 3913 ATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGATCAAC 3972 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACA----GATTAT 146207 || | | || ||||| |||||||| ||||| ||| | ||||| || ||||| Sbjct 3973 AACGTTTAATATTTGCTGGTAAACAGTTAGAAGAT----GGACGTTCACTTTCCGATTAC 4028 Query 146208 AATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 ||||| ||||||||||| || | || || ||| | || ||| | || || Sbjct 4029 AATATTCAAAAAGAATCAACATTACACTTGGTACTTCGTTTACGCGGTGG 4078 >seq1364 Length=43964 Score = 122 bits (134), Expect = 1e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| | || || | || || ||||| |||||| |||| ||||| | | | Sbjct 15700 TGCAAATTTTCGTTAAGACTCTTACCGGTAAAACTATTACTCTTGAAGTAGAGTCCTCA- 15758 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | | || ||| || || ||| |||||||||||||| || ||||| Sbjct 15759 GATACCATTGACCAAGTTAAAGCGAAGATTCAAGACAAAGAAGGCATTCCCCCGGATCAG 15818 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | || ||||| ||||||||||| || ||| | || || ||||||| ||| Sbjct 15819 CAACGCTTGATCTTTGCCGGTAAACAATTGGAAGATGGACGTACCTTGTCAGATTACAAT 15878 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || ||||| || || ||| ||||| | || | || |||||||| |||| Sbjct 15879 ATCCAAAAGGAGTCAACTCTCCATCTCGTGCTCCGTTTAAGAGGTGGTA 15927 >seq1345 Length=25233 Score = 114 bits (126), Expect = 2e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 146046 AAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAAT 146105 ||||||||||| |||||||| | || ||||| || || || ||||| ||| | | Sbjct 19433 AAAACATTAACTGGAAAAACTCTAACAATTGAAGTCGAGTTTAGTGATACAATTGATCAA 19492 Query 146106 GTAAAAAATAAAATACAACT--TAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTT 146163 |||||| ||||| ||| |||||||| || ||||| |||||||||||| | |||| Sbjct 19493 TTAAAAACAAAAAT--TACTGAAAAAGAAGGTATACCACCAGATCAACAAAGATTAATTT 19550 Query 146164 TTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAAT 146223 |||| ||||| ||| | || ||| | || |||| ||||| |||||| || | Sbjct 19551 TTGCTGGTAAGCAACTTGAAGATGGCCGTACTTTAAGTGATTACAATATATGTGTTGAGT 19610 Query 146224 CGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || | |||||||||||| ||||||| || || Sbjct 19611 CCACGCTACATTTAGTATTAAGATTAAGGGGTGG 19644 >seq1506 Length=18313 Score = 109 bits (120), Expect = 9e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 146129 AGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAA 146188 |||||| || || || ||||||||| | | || | || ||||||||| | || ||| | Sbjct 10861 AGAAGGTATACCTCCAGATCAACAACGTTTGCTTATGGCCGGTAAACAACTTGAAGATGA 10802 Query 146189 TAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATT 146248 | | || ||| |||||||||||||||| | ||||| ||| | |||||||||||| |||| Sbjct 10801 TCGCACTTTAGAAGATTATAATATACAACATGAATCTACTGTACATTTAGTATTAAGATT 10742 Query 146249 AAGAGGAGGT 146258 |||||| ||| Sbjct 10741 AAGAGGTGGT 10732 >seq9491 Length=922 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 146034 CAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGAT 146093 ||||||||| | || |||||||| || ||||| || || | || || | || ||| Sbjct 317 CAAATATTCGTTAATACATTAACTGGTAAAACTATAACACTAGAATTAAATTTTAGTGAT 376 Query 146094 ACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAA 146153 || ||| | || ||||| | ||||| || ||||||||| || || || ||||||||| Sbjct 377 ACAATTTATAACCTAAAAGAAAAAATTCAGGATAAAGAAGGGATACCTCCAGATCAACAA 436 Query 146154 AGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATA 146213 ||| | ||||||| |||| | | || ||| | |||||| | ||||| || ||| Sbjct 437 AGATTAGTTTTTGCTGGTATGTTACTTGAAGATGGCCGTACGTTATCGGATTACAAGATA 496 Query 146214 CAAAAAGAATCGACTATCCATTTAGTATT 146242 ||||| | || || || ||| | ||||| Sbjct 497 AAAAAACATTCCACAATACATCTGGTATT 525 >seq2123 Length=30488 Score = 102 bits (112), Expect = 1e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || |||||||| | || || || || ||||| |||| || ||| ||| Sbjct 14792 TGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT- 14734 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | | || |||| ||||| ||| |||||| || || || || ||||| Sbjct 14733 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGGATCCCTCCAGATCAG 14674 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | ||||| || ||||| ||||| || ||| | | || | | |||||||| Sbjct 14673 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 14614 Query 146211 ATACAAAAAGAATCGACT 146228 || ||||||||||| ||| Sbjct 14613 ATCCAAAAAGAATCAACT 14596 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| |||| ||| | || || ||||| || || | || ||||| | Sbjct 15248 TGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCGG 15189 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | | ||||||| ||||| ||| ||| || || || || || || || | Sbjct 15188 ATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAGC 15129 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | |||||||| || ||||||||| | || ||| |||| | | || || |||| Sbjct 15128 AACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAATA 15069 Query 146212 TACAAAAAGAATCGACTATCCAT 146234 | ||||||||||| ||| | ||| Sbjct 15068 TTCAAAAAGAATCCACTCTTCAT 15046 >seq1360 Length=52185 Score = 93.3 bits (102), Expect = 7e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146034 CAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGAT 146093 ||||| || | ||||| ||| || ||||||||| | ||||| || || ||| Sbjct 42114 CAAATTTTTGTTAAAACTGTAAGTGGCAAAACAATTGCCATTGAAGTTGATGCCTCTGAT 42173 Query 146094 ACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAA 146153 || || || | || ||||| | ||| ||| ||||||||||| ||| || |||| ||| Sbjct 42174 ACAGTTAAAGAAGTGAAAAACATAATTCAAGATAAAGAAGGCACTCCTCCAAATCAGCAA 42233 Query 146154 AGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATA 146213 | | || ||||| ||||||||| | || ||||| || || ||| |||||||||| Sbjct 42234 CGTTTGATCTTTGCTGGTAAACAACTGGAAGATAAACATACTTTGACACATTATAATATT 42293 Query 146214 CAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | |||| ||| | ||| | || | || ||||||| |||| Sbjct 42294 AGGGATAAATCAACTCTTCATCTCGTGCTCCGTCTAAGAGGTGGTA 42339 >seq642 Length=35260 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 146046 AAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAAT 146105 |||||||| || ||||||||| ||| | ||| | || | ||| |||||| | | Sbjct 6453 AAAACATTGACCGGAAAAACAGTTATCCTAGATTTTGATTCAAGCGACACTATTGATATG 6512 Query 146106 GTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTT 146165 | ||| ||| | | |||||||||||||| || || || ||| | | |||||| Sbjct 6513 ATTAAATCTAAGGTCGAGAAAAAAGAAGGCATTCCTCCTGACCAGCAACGTATTATTTTT 6572 Query 146166 GCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCG 146225 || ||||| ||||| || ||| | ||| ||| ||||||||||||| ||| |||| || Sbjct 6573 GCTGGTAAGCAATTGGAGGATGGAAAAACTTTATCAGATTATAATATTCAAGAAGAGTCT 6632 Query 146226 ACTATCCATTTAGTA 146240 || | ||| | ||| Sbjct 6633 ACGTTGCATCTTGTA 6647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786024143189920