Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1330 190 5e-43 seq3144 118 3e-21 seq151 95.1 3e-14 seq1 93.3 1e-13 seq23 89.7 1e-12 >seq1330 Length=20794 Score = 190 bits (210), Expect = 5e-43 Identities = 436/652 (67%), Gaps = 7/652 (1%) Strand=Plus/Minus Query 110258 AAAACTAAATAATATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAA 110317 |||||| ||| || ||| |||| | | || ||| | | | |||||||| || || Sbjct 17799 AAAACTTAATTCTACGATCATTTATGATAGAGATTATAAATATAATTATTTTGGATTTAA 17740 Query 110318 AACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACA 110377 |||||||||| | ||||| | | || | ||| | | || ||||| ||||| Sbjct 17739 AACTCTTGAAAGATCTTATCTTTTACGAATAGGTGGAAAAGTTGCCGAGCGTCCCCAACA 17680 Query 110378 CATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATG 110437 ||| || | || || ||| |||| ||||| ||| ||||||| |||||| ||||||| Sbjct 17679 TATGCTTATGCGCGTAGCGGTTGGGATTCACGGAGATGATATCGAAGCTGCTATTGAAAC 17620 Query 110438 TTATGATGT-AT-TAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCA 110495 ||| || | || | || ||||| || ||| || |||| || | ||||| || Sbjct 17619 TTACAATCTGATGTCAG--AAAAGTTCTTTACTCACGCATCTCCGACTTTGTTTAATGCT 17562 Query 110496 GGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATT 110555 || || | || ||| | | ||| |||||| || || || |||||||| || Sbjct 17561 GGCACACCTAGACCTCAACTTTCGAGTTGTTTTCTTTTAACTATGAAAGATGATTCAATA 17502 Query 110556 GAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATT 110615 || || || |||||| || | ||| | || | |||||||| | | || || ||| Sbjct 17501 GAGGGAATCTATGATACTTTGAAAACATGCGCAATGATTTCTAAGACTGCAGGTGGTATT 17442 Query 110616 GGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCT 110675 ||| | || ||||| | ||||| | | |||| | |||| || | | || ||| | Sbjct 17441 GGTGTGAACATTCATAACATTCGTGCGACAGGATCTTATATTGCTGGAACAAATGGTTAT 17382 Query 110676 TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAA 110735 |||| |||| || |||| |||||| | || | || | ||||| | |||||| ||||| Sbjct 17381 TCAAATGGAATTATTCCCATGTTACGCGTTTATAATAATACTGCTAGATATGTTGATCAA 17322 Query 110736 GGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATA 110792 || || || | | | ||| | |||||||| ||| | ||| | |||||| | || || Sbjct 17321 GGAGGAAACAAACGTCCGGGCGCGTTTGCTATTTATTTAGAAACGTGGCATCCTGACATT 17262 Query 110793 TTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTA 110852 ||||| || | || | |||||| ||| |||||| | ||||| |||||| Sbjct 17261 TTTGATTTTATGGATTTAAAAAAAAATACTGGAAAAGAAGAAGTTCGTGCACGGGATTTA 17202 Query 110853 TTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATG 110904 ||||||||| | ||| |||| ||| | || |||||| | ||| || ||||| Sbjct 17201 TTTTATGCACTTTGGGTTTCGGATCTTTTTATGAAAAGGGTTGAATCAAATG 17150 >seq3144 Length=5517 Score = 118 bits (130), Expect = 3e-21 Identities = 329/499 (66%), Gaps = 8/499 (2%) Strand=Plus/Plus Query 131800 AAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAG 131859 ||| ||||| || |||||| || ||||||| ||| | || ||| || | | Sbjct 4516 AAAAAAAGCGGATTGGGCTCTTCGATGGATTTCCGATAAGGAATCTTCATTTGCTGAACG 4575 Query 131860 ACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTT 131919 |||||||| ||||| ||||||||| ||||||||||| || |||||| | ||||| Sbjct 4576 TCTTGTAGCGTTTGCCGCTGTTGAAGGAATATTCTTTTCTGGAGCTTTCGCGTCAATCTT 4635 Query 131920 TTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAG 131979 |||| | ||||| | ||| ||||||| ||| | | || ||||| || | || || | Sbjct 4636 TTGGTTAAAGAAAAGAGGAATGATGCCAGGATTAACTTTTTCCAACGAACTAATTTCTCG 4695 Query 131980 AGATGAAGCATTGCATACTGAATTTGC---TATATTAATCTATAGAAAATTTGCTGATAA 132036 |||||||| ||||||| ||| ||||| | | ||| || | | || | | | Sbjct 4696 AGATGAAGGATTGCATTGTGATTTTGCATGTCTCTTATTCACT--CATCTTCGTGCACGA 4753 Query 132037 ACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTT 132096 || | |||| | | | || ||||| ||||| ||| || || | || || Sbjct 4754 CCTCCAACAAAA-ACTGTAGAAGCTATTATAGCGGAAGCGGTTACAATAGAACAAGAATT 4812 Query 132097 TATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTA 132156 | | |||||||| || || ||||| ||||| ||||| || | | ||||| | || Sbjct 4813 TTTAACAGAAGCATTACCAGTTAATTTAATTGGTATGAACGCGAATTTAATGAAAAAATA 4872 Query 132157 CATTGAATTCGTTGCTGATCGTTTAATTAACCAACTTGGATATTCCAAGATT-TATAACA 132215 |||||||| || |||||| | ||| | |||||| | ||| ||| ||||| Sbjct 4873 TATTGAATTTGTAGCTGATAGATTATTAGTGGCACTTGG-TGGAGCAAAATTGTATAATT 4931 Query 132216 CCCAAAACCCCTATACATGGATGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCG 132275 | | || || | | | ||||| | |||| | |||||||||| || ||||| | Sbjct 4932 CAGAGAATCCTTTTGATTTTATGGATTTAATTAGTTTACAAGGTAAAACAAATTTCTTTG 4991 Query 132276 AAAGTCGTGTATCTGAGTA 132294 ||| || ||||| || || Sbjct 4992 AAAAACGCGTATCAGATTA 5010 >seq151 Length=97331 Score = 95.1 bits (104), Expect = 3e-14 Identities = 171/248 (69%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 304894 TCATATTGCAACATTAATGGATAATGAAATTGCTGG--AATTATGCAGGCATCTCAAAGA 304951 |||| |||||| | ||||||||||| || ||||| || | || |||| |||| | Sbjct 48431 TCATTGTGCAACTTATATGGATAATGAGATGGCTGGTCAACCA--CAAGCATTACAAAAA 48374 Query 304952 TCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGTATTCGA 305011 ||||| ||||||||||| || || ||| | || |||||||| || ||| |||| Sbjct 48373 TCTGGTAGACCTTTAAAATCAATCAGAGCACGTCTCAAGGGTAAAGAAGGACGTCTTCGT 48314 Query 305012 GGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCTGATTCT 305071 || ||||||||||| |||||||| || ||| ||| | | || || || ||| | Sbjct 48313 GGAAATCTAATGGGTAAACGTGTAGACTTTTCTGCTCGTACAGTCATTACGGGAGATCCG 48254 Query 305072 CAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAAATTGCTTTAAAACTAACATTTCCA 305131 | || | ||||| | |||||||||| || |||| ||| |||| ||||| Sbjct 48253 AATATATCAGTAGATGAAGTTGGAGTTCCAAAAAGTATAGCTTCAAATTTAACTTTTCCT 48194 Query 305132 GAGAAAGT 305139 || | ||| Sbjct 48193 GAAATAGT 48186 >seq1 Length=353628 Score = 93.3 bits (102), Expect = 1e-13 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 || ||||| || |||| | ||| ||||| ||||||||||| ||||||||||| |||||| Sbjct 71281 ACTTTTCGTTTTAATGAATGTGTTTGTAGTCCTTATAATGCAGATTTTGATGGTGATGAA 71340 Query 305465 ATGAATATGCATGTACCTCAA 305485 |||||| | |||||||||||| Sbjct 71341 ATGAATCTTCATGTACCTCAA 71361 >seq23 Length=114346 Score = 89.7 bits (98), Expect = 1e-12 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 279065 GGTATTCCAAAACTTGATGATGCAAACTGGGCTGGAGGTCGTAAATCTCAAGAATGTGCT 279124 |||||| | ||||| ||||||||||| || || ||| |||| |||||| ||| || Sbjct 22314 GGTATTGCTAAACTGGATGATGCAAATAATGCCGGCGGTAAAAAATGTCAAGATTGTACT 22255 Query 279125 TTATTTCTTACTGAGGGAGATTCTGCTGCTACATTTGCGATTGCTGGTTTATCTGTTATT 279184 ||| | |||||||| || |||||||| | || || |||| || || ||| | || Sbjct 22254 TTAATCCTTACTGAAGGCGATTCTGCAAAGGCTTTGGCAGTTGCCGGATTTTCTATAGTT 22195 Query 279185 GGTCGTGATAAATATGGCGTATTTCCTTTAAGAGGTAAAGTAATTAATGCTCGTGAT 279241 |||||||| || ||||| || || || | | || ||| || | |||| | | ||| Sbjct 22194 GGTCGTGACAATTATGGAGTTTTCCCGCTTCGTGGGAAATTATTAAATGTTAGGGAT 22138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186592677379436