Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2123 120 3e-22 seq1318 118 1e-21 seq352 111 1e-19 seq1364 102 8e-17 seq1345 89.7 5e-13 seq1330 86.0 6e-12 >seq2123 Length=30488 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | |||||||||||||||| |||||||| | ||| || ||| || Sbjct 14813 ACCAAATGAAGTGTTGACTCTTTTTGAATATTGTAGTCAGAAAGGGTTCGTCCATCCTCA 14872 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || |||||||||| | || ||||| || |||||||| || || |||||||| || | Sbjct 14873 AGTTGTTTACCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATACCTTCTTTGTCTTGA 14932 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || ||| ||| | || || | ||||||| | ||| ||||| | || | ||||| Sbjct 14933 ATCTTTGCTTTTACTTGATCGATGGTATCGGAAGACTCAACTTCCAAAGTAATGGTTTTT 14992 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| | ||||| ||||| Sbjct 14993 CCAGTTAGAGTTTTAACAAAAATTTGCAT 15021 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||||||||||||||| || || | |||||| ||||| || ||||| || | Sbjct 15282 TTGACTCTTTTTGAATGTTATAATCTGAAAGGGTACGACCGTCTTCAAGTTGTTTGCCAG 15341 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | || ||||| || || ||||| || || |||||||| || ||||||| ||| | Sbjct 15342 CGAAAATAAGACGTTGCTGGTCTGGGGGAATTCCTTCTTTGTCTTGAATTTTTGCTTTAA 15401 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||| |||| | || ||||| | || | || || || || || |||| Sbjct 15402 CTTGGTCAATAGTGTCGGAAGATTCAACTTCAAGGGTGATTGTCTTTCCGGTAAGGGTTT 15461 Query 132108 TTATGAAAATCTGCATGA 132125 | | ||| || ||||||| Sbjct 15462 TAACGAAGATTTGCATGA 15479 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| |||||||| ||||| || || | ||||| |||||| | || ||||| | Sbjct 14598 TTGATTCTTTTTGGATGTTATAATCCGAAAGAGTACGACCATCTTCCAATTGCTTACCAG 14657 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | || | ||| || ||||||||||| || || |||||||| |||||| ||| | Sbjct 14658 CGAAAATCAAACGTTGCTGATCTGGAGGGATCCCCTCTTTATCTTGAATTTTGGTTTTAA 14717 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 ||| || | ||||| | | || || || | || | ||| |||||||| || |||| Sbjct 14718 CCTGATCAATGGTATCAGATGATTCGACCTCAAGGGTAATCGTCTTACCAGTAAGTGTTT 14777 Query 132108 TTATGAAAATCTGCAT 132123 ||| ||||| ||||| Sbjct 14778 TTACAAAAATTTGCAT 14793 >seq1318 Length=24839 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| |||| |||| ||||||||||| ||||| ||| | | ||| |||||| Sbjct 4060 ACCAAGTGTAATGTTGATTCTTTTTGAATATTGTAATCGGAAAGTGAACGTCCATCTTCT 4001 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||||||||| | | | |||| ||| |||||||| || || || ||||||||||| | Sbjct 4000 AACTGTTTACCAGCAAATATTAAACGTTGTTGATCCGGGGGGATTCCTTCTTTATCTTGA 3941 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||||| ||| | | || | |||||| | || ||||| | || | |||||| Sbjct 3940 ATTTTTTCTTTGACTTTATCGATGGTATCGCTACTTTCAACTTCTAAAGTAATGGTTTTA 3881 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || ||||| | ||||| |||||| Sbjct 3880 CCAGTAAGTGTTTTAACAAAAATTTGCATG 3851 >seq352 Length=65406 Score = 111 bits (122), Expect = 1e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || |||||||||||||| ||||| || ||||| |||||| | |||||||| | Sbjct 29447 GATTCTTTTTGAATGTTATAGTCTGACAATGTACGACCATCTTCTAATTGTTTACCAGCG 29506 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | || ||||||||||| || || ||||||||||| ||| ||| ||| | Sbjct 29507 AAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCTTTATCTTGAATCTTTGCTTTAACT 29566 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 || || | ||||| | | ||| ||||| | || | |||||||| ||||| ||||| Sbjct 29567 TGGTCTATGGTATCAGAGGACTCTACTTCAAGAGTGATTGTTTTACCGGTCAGCGTTTTA 29626 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 29627 ACGAAAATTTGCAT 29640 Score = 105 bits (116), Expect = 6e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||||||||| || || || || |||||| |||||| | |||||||| | Sbjct 29673 TTGATTCTTTTTGAATATTATAATCTGACAAAGTACGCCCATCTTCCAATTGTTTACCAG 29732 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||||| || |||||||||||||| || ||||| ||||| ||| ||| ||| | Sbjct 29733 CGAAGATTAAGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGCTTTAA 29792 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | |||||| | | ||| ||||| | || | ||||| ||||| || || | Sbjct 29793 CTTGATCAATAGTATCATTGGACTCGACTTCAAGGGTAATGGTTTTCCCAGTAAGGGTCT 29852 Query 132108 TTATGAAAATCTGCAT 132123 | | ||| || ||||| Sbjct 29853 TGACGAATATTTGCAT 29868 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| ||||||||||| || || || || ||||| |||||| | |||||||| | Sbjct 29217 TTGATTCTTTTTGAATATTATAATCTGACAACGTACGACCATCTTCTAATTGTTTACCAG 29276 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| | || |||||||||||||| || ||||||||||| ||| || ||| | Sbjct 29277 CGAAGATCAAGCGTTGTTGATCTGGAGGGATACCTTCTTTATCTTGAATCTTCGTTTTTA 29336 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||||| | | ||| ||||| | || | |||||||| || || || | Sbjct 29337 CTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGGGTCT 29396 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||| ||||| Sbjct 29397 TGACGAAAATTTGCAT 29412 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| || |||||||| || ||||| | ||||| |||||| | |||||||||| Sbjct 28989 TTGATTCCTTTTGAATATTATAGTCCGATAAAGTACGGCCATCTTCCAATTGTTTACCGG 29048 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| | || ||||||||||| || || ||||| ||||| ||| ||| ||| | Sbjct 29049 CGAAGATCAAGCGTTGTTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTTGCTTTAA 29108 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||||| | | ||| ||||| | || | |||||||| || || || | Sbjct 29109 CTTGATCTATGGTATCAGAGGACTCGACTTCAAGAGTAATTGTTTTACCGGTGAGGGTCT 29168 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||| ||||| Sbjct 29169 TGACGAAAATTTGCAT 29184 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| || || || | ||||| |||||| | |||||||| | Sbjct 28763 GATTCTTTTTGAATATTATAATCCGATAAAGTACGACCATCTTCCAATTGTTTACCAGCG 28822 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | || || ||||||||||| || ||||| ||||| ||| ||| ||| | Sbjct 28823 AAGATCAAGCGTTGCTGATCTGGAGGAATACCTTCCTTATCTTGAATCTTTGCTTTAACT 28882 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 || || | ||||| | | ||| ||||| | || | |||||||| || || || || Sbjct 28883 TGGTCTATGGTATCAGAGGACTCAACTTCAAGGGTAATTGTTTTACCGGTGAGGGTCTTG 28942 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 28943 ACGAAAATTTGCAT 28956 >seq1364 Length=43964 Score = 102 bits (112), Expect = 8e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| ||||| || ||||| || || |||||| |||||| | |||||||||| Sbjct 15894 TTGACTCCTTTTGGATATTGTAATCTGACAAGGTACGTCCATCTTCCAATTGTTTACCGG 15835 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| | || || ||||| || || ||||||||||| || ||| || ||| | Sbjct 15834 CAAAGATCAAGCGTTGCTGATCCGGGGGAATGCCTTCTTTGTCTTGAATCTTCGCTTTAA 15775 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 || || | ||||| | | ||| ||||| | || | |||||||| || ||||| | Sbjct 15774 CTTGGTCAATGGTATCTGAGGACTCTACTTCAAGAGTAATAGTTTTACCGGTAAGAGTCT 15715 Query 132108 TTATGAAAATCTGCAT 132123 | | |||||| ||||| Sbjct 15714 TAACGAAAATTTGCAT 15699 >seq1345 Length=25233 Score = 89.7 bits (98), Expect = 5e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 131942 ATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGC 132001 || ||||| || || | ||||| |||||| || || ||||| | | | |||| | Sbjct 19599 ATATTGTAATCACTTAAAGTACGGCCATCTTCAAGTTGCTTACCAGCAAAAATTAATCTT 19540 Query 132002 TGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTA 132061 ||||||||||| ||||| |||||||| || ||||||||| ||| || || || | ||| Sbjct 19539 TGTTGATCTGGTGGTATACCTTCTTTTTCAGTAATTTTTGTTTTTAATTGATCAATTGTA 19480 Query 132062 TCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108 || | ||| ||||| | || || ||||| ||||| | ||||| Sbjct 19479 TCACTAAACTCGACTTCAATTGTTAGAGTTTTTCCAGTTAATGTTTT 19433 >seq1330 Length=20794 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 || || | |||||| ||||| || || ||||||| | || | ||||| || |||| Sbjct 16057 TTAACAATTTGAAATTCGCCAGCGAGAACACGTCGTTGGTAAATGTTGCTCGTATAAGGT 16116 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 |||||| | |||||| ||| |||||||||| || | ||| |||||||| || | | Sbjct 16117 TCAAAACATTCATTAAAGCCCAATATTTGGGAAGTAGATGCAGTAGGCATTGGTGCGAGC 16176 Query 147013 AACAATGAATTTCGCAGACC 147032 || ||||||||||| | ||| Sbjct 16177 AATAATGAATTTCGTACACC 16196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476524957203360