Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhizophagus_20irregularis_20[genbank_20GCA_5F001593205.1_202016-03- 16] 14,476 sequences; 131,334,864 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq2123 136 4e-27 seq1345 129 5e-25 seq1318 107 2e-18 seq352 102 7e-17 >seq2123 Length=30488 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| |||| |||||| | || || | ||||| || | | Sbjct 15021 ATGCAAATTTTTGTTAAAACTCTAACTGGAAAAACCATTACTTTGGAAGTTGAGTCTTCC 14962 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| ||||||||| ||| ||| || ||||| ||||| || || |||||| Sbjct 14961 GATACCATCGATCAAGTAAAAGCAAAGATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 14902 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || ||| |||||||| || |||| ||| | || |||||| Sbjct 14901 CAACGTCTCATTTTCGCCGGTAAACAACTTGAGGATGGACGAACCCTTTCTGACTACAAT 14842 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||||||||||| || || ||||||| ||| Sbjct 14841 ATTCAAAAAGAGTCAACACTTCATTTGGTG 14812 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || ||||| ||| | ||||| ||| | ||||| | || || || || Sbjct 15249 ATGCAAATCTTCGTAAAGACACTCACCGGCAAAACCATCACCTTGGACGTAGAGTCCTCG 15190 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| ||||||||| |||||| ||||| |||||||| || || || ||| Sbjct 15189 GATACCATCGACCAAGTAAAAACCAAAATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 15130 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | ||||||| || || |||||||| || |||| ||| | ||| |||||| Sbjct 15129 CAACGTCTCATTTTCGCTGGTAAACAACTTGAGGATGGACGAACCCTTTCCGACTACAAT 15070 Query 25355 ATTCAAAAAGAATCCACCATTCAT 25378 ||||||||||||||||| ||||| Sbjct 15069 ATTCAAAAAGAATCCACTCTTCAT 15046 Score = 120 bits (132), Expect = 3e-22 Identities = 161/222 (73%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 25164 AATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAG 25223 |||||| | ||||||| | || || ||||| | |||||||| | ||||| | |||| Sbjct 15488 AATTAACAATCATGCAAATCTTCGTTAAAACCCTTACCGGAAAGACAATCACCCTTGAAG 15429 Query 25224 TCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATAC 25283 | ||| | ||| ||||| || ||||| ||| ||||||| || ||||| || || | Sbjct 15428 TTGAATCTTCCGACACTATTGACCAAGTTAAAGCAAAAATTCAAGACAAAGAAGGAATTC 15369 Query 25284 CGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGT 25341 | || || |||||| | || |||| || ||||||||||| ||||| | | | | | | Sbjct 15368 CCCCAGACCAGCAACGTCTTATTTTCGCTGGCAAACAACTTGAAGACGGTCGTACCCTTT 15309 Query 25342 CAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||| || ||||||||||| || || ||||| |||| Sbjct 15308 CA--GATTATAACATTCAAAAAGAGTCAACTCTTCATCTAGT 15269 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | |||||||||||| | || || || |||| || | || |||||| | Sbjct 14793 ATGCAAATTTTTGTAAAAACACTTACTGGTAAGACGATTACCCTTGAGGTCGAATCATCT 14734 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || || || ||| |||||| ||||||||||| || || || |||||| Sbjct 14733 GATACCATTGATCAGGTTAAAACCAAAATTCAAGATAAAGAGGGGATCCCTCCAGATCAG 14674 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | |||| || || || ||| | ||||||| | | | | | ||||| || Sbjct 14673 CAACGTTTGATTTTCGCTGGTAAGCAATTGGAAGATGGTCGTACTCTTTCGGATTATAAC 14614 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 || ||||||||||| || |||| Sbjct 14613 ATCCAAAAAGAATCAACTCTTCA 14591 >seq1345 Length=25233 Score = 129 bits (142), Expect = 5e-25 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 25181 GTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACT 25240 |||| || ||||||||||| |||||| | | || || |||||||| | ||||| Sbjct 19424 GTGTACGTTAAAACATTAACTGGAAAAACTCTAACAATTGAAGTCGAGTTTAGTGATACA 19483 Query 25241 ATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGA 25300 || || ||| ||||| ||||||||| || ||||| |||||||| || ||||| |||||| Sbjct 19484 ATTGATCAATTAAAAACAAAAATTACTGAAAAAGAAGGTATACCACCAGATCAACAAAGA 19543 Query 25301 CTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAA 25360 | |||| | || || ||||| ||||||| | | | | || ||||||||||| Sbjct 19544 TTAATTTTTGCTGGTAAGCAACTTGAAGATGGCCGTACTTTAAGTGATTACAATATATGT 19603 Query 25361 AAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || ||||| | |||||||| |||||||| || || || Sbjct 19604 GTTGAGTCCACGCTACATTTAGTATTAAGATTAAGGGGTGG 19644 >seq1318 Length=24839 Score = 107 bits (118), Expect = 2e-18 Identities = 146/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 ||||||||| | ||||| |||||| | || || ||| | || || | ||||| ||| Sbjct 3849 AACATGCAAATTTTTGTTAAAACACTTACTGGTAAAACCATTACTTTAGAAGTTGAAAGT 3908 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 | |||||| ||||| |||| ||| |||||||| |||||||| || || || || ||| Sbjct 3909 AGCGATACCATCGATAAAGTCAAAGAAAAAATTCAAGATAAAGAAGGAATCCCCCCGGAT 3968 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGA--AATGTCAGCGATT 25349 || ||| | | || | | || ||||| | ||||||| | | | || ||||| Sbjct 3969 CAACAACGTTTAATATTTGCTGGTAAACAGTTAGAAGATGGACGTTCACTTTC--CGATT 4026 Query 25350 ACAATATTCAAAAAGAATCCAC 25371 ||||||||||||||||||| || Sbjct 4027 ACAATATTCAAAAAGAATCAAC 4048 >seq352 Length=65406 Score = 102 bits (112), Expect = 7e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | ||||| ||| | || || | |||||||| || Sbjct 29412 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 29353 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || ||||||||| || ||| |||||||| ||||| || || ||||| Sbjct 29352 GATACCATAGATCAAGTAAAAACGAAGATTCAAGATAAAGAAGGTATCCCTCCAGATCAA 29293 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | | || | || || |||||| | ||||||| | | | |||||| |||| | Sbjct 29292 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACGTTGTCAG--ATTATA 29235 Query 25353 ATATTCAAAAAGAATCCAC 25371 |||||||||||||||| || Sbjct 29234 ATATTCAAAAAGAATCAAC 29216 Score = 102 bits (112), Expect = 7e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| | ||||| ||| | ||||| | ||||| || || Sbjct 29640 ATGCAAATTTTCGTTAAAACGCTGACCGGTAAAACAATCACTCTTGAAGTAGAGTCCTCT 29581 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || ||||| ||| ||| ||| |||||||| ||||| || || ||||| Sbjct 29580 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAAGAAGGTATCCCCCCAGATCAA 29521 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 ||| | | || | || || |||||| | ||||||| | | | |||||| | || | Sbjct 29520 CAACGCTTGATCTTCGCTGGTAAACAATTAGAAGATGGTCGTACATTGTCAG--ACTATA 29463 Query 25353 ATATTCAAAAAGAATCCAC 25371 | ||||||||||||||||| Sbjct 29462 ACATTCAAAAAGAATCCAC 29444 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || || ||| | || || | |||||||| |||| Sbjct 29868 ATGCAAATATTCGTCAAGACCCTTACTGGGAAAACCATTACCCTTGAAGTCGAGTCCAAT 29809 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || ||||| ||| ||| ||| ||||| || || || || || ||||| Sbjct 29808 GATACTATTGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 29749 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAT--GTCAGCGATTACA 25352 ||| | | || | || || |||||| | ||||||| | | | ||||| |||| | Sbjct 29748 CAACGCTTAATCTTCGCTGGTAAACAATTGGAAGATGGGCGTACTTTGTCAG--ATTATA 29691 Query 25353 ATATTCAAAAAGAATCCAC 25371 |||||||||||||||| || Sbjct 29690 ATATTCAAAAAGAATCAAC 29672 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | ||||| ||| | || || | ||||| || || Sbjct 28956 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACCCTTGAAGTTGAGTCCTCT 28897 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || ||||| ||| ||| ||| ||||| || ||||| || || |||||| Sbjct 28896 GATACCATAGACCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATTCCTCCAGATCAG 28837 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | || || |||||| | ||||||| | | | | | ||||| ||| Sbjct 28836 CAACGCTTGATCTTCGCTGGTAAACAATTGGAAGATGGTCGTACTTTATCGGATTATAAT 28777 Query 25355 ATTCAAAAAGAATCCAC 25371 |||||||||||||| || Sbjct 28776 ATTCAAAAAGAATCTAC 28760 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | ||||| ||| | || || | |||||||| || Sbjct 29184 ATGCAAATTTTCGTCAAGACCCTCACCGGTAAAACAATTACTCTTGAAGTCGAGTCCTCT 29125 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || ||||| ||| ||| ||| ||||| || ||||| || || ||||| Sbjct 29124 GATACCATAGATCAAGTTAAAGCAAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAA 29065 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| | | || | || ||| |||||| | ||||||| | | | | || || ||| Sbjct 29064 CAACGCTTGATCTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTATCGGACTATAAT 29005 Query 25355 ATTCAAAAAGAATCCAC 25371 |||||||| ||||| || Sbjct 29004 ATTCAAAAGGAATCAAC 28988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445013860168320